The updated RGD Pathway Portal utilizes increased curation efficiency and provides expanded pathway information

G. Thomas Hayman; Pushkala Jayaraman; Victoria Petri; Marek Tutaj; Weisong Liu; Jeff De Pons; Melinda R. Dwinell; Mary Shimoyama

doi:10.1186/1479-7364-7-4

The updated RGD Pathway Portal utilizes increased curation efficiency and provides expanded pathway information

G. Thomas Hayman, Pushkala Jayaraman, Victoria Petri, Marek Tutaj, Weisong Liu, Jeff De Pons, Melinda R. Dwinell, Mary Shimoyama

Research output: Contribution to journal › Article › peer-review

7 Scopus citations

Abstract

The RGD Pathway Portal provides pathway annotations for rat, human and mouse genes and pathway diagrams and suites, all interconnected via the pathway ontology. Diagram pages present the diagram and description, with diagram objects linked to additional resources. A newly-developed dual-functionality web application composes the diagram page. Curators input the description, diagram, references and additional pathway objects. The application combines these with tables of rat, human and mouse pathway genes, including genetic information, analysis tool and reference links, and disease, phenotype and other pathway annotations to pathway genes. The application increases the information content of diagram pages while expediting publication.

Original language	English
Article number	4
Journal	Human Genomics
Volume	7
Issue number	1
DOIs	https://doi.org/10.1186/1479-7364-7-4
State	Published - 2013
Externally published	Yes

Keywords

Curation
Databases
Ontologies
Pathways
Tools

Access to Document

10.1186/1479-7364-7-4

Cite this

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title = "The updated RGD Pathway Portal utilizes increased curation efficiency and provides expanded pathway information",

abstract = "The RGD Pathway Portal provides pathway annotations for rat, human and mouse genes and pathway diagrams and suites, all interconnected via the pathway ontology. Diagram pages present the diagram and description, with diagram objects linked to additional resources. A newly-developed dual-functionality web application composes the diagram page. Curators input the description, diagram, references and additional pathway objects. The application combines these with tables of rat, human and mouse pathway genes, including genetic information, analysis tool and reference links, and disease, phenotype and other pathway annotations to pathway genes. The application increases the information content of diagram pages while expediting publication.",

keywords = "Curation, Databases, Ontologies, Pathways, Tools",

author = "Hayman, {G. Thomas} and Pushkala Jayaraman and Victoria Petri and Marek Tutaj and Weisong Liu and {De Pons}, Jeff and Dwinell, {Melinda R.} and Mary Shimoyama",

note = "Funding Information: We thank Jennifer R. Smith for assistance with preparation of the figures, and the RGD Team. This work was supported by the National Heart, Lung, and Blood Institute on behalf of the National Institutes of Health [HL64541].",

year = "2013",

doi = "10.1186/1479-7364-7-4",

language = "English",

volume = "7",

journal = "Human Genomics",

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AU - Hayman, G. Thomas

AU - Jayaraman, Pushkala

AU - Petri, Victoria

AU - Tutaj, Marek

AU - Liu, Weisong

AU - De Pons, Jeff

AU - Dwinell, Melinda R.

AU - Shimoyama, Mary

N1 - Funding Information: We thank Jennifer R. Smith for assistance with preparation of the figures, and the RGD Team. This work was supported by the National Heart, Lung, and Blood Institute on behalf of the National Institutes of Health [HL64541].

PY - 2013

Y1 - 2013

N2 - The RGD Pathway Portal provides pathway annotations for rat, human and mouse genes and pathway diagrams and suites, all interconnected via the pathway ontology. Diagram pages present the diagram and description, with diagram objects linked to additional resources. A newly-developed dual-functionality web application composes the diagram page. Curators input the description, diagram, references and additional pathway objects. The application combines these with tables of rat, human and mouse pathway genes, including genetic information, analysis tool and reference links, and disease, phenotype and other pathway annotations to pathway genes. The application increases the information content of diagram pages while expediting publication.

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KW - Ontologies

KW - Pathways

KW - Tools

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The updated RGD Pathway Portal utilizes increased curation efficiency and provides expanded pathway information

Abstract

Keywords

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