TY - JOUR
T1 - The Génolevures database
AU - Martin, Tiphaine
AU - Sherman, David J.
AU - Durrens, Pascal
N1 - Funding Information:
We thank all our colleagues from the Génolevures consortium for their devoted work on the sequencing, assembly and annotations of the genomes present in the database, as well as for helpful and creative discussions. The current hardware had been supported by the funding of the University of Bordeaux 1, the Aquitaine Région in the program “Génotypage et Génomique Comparée”, and the ACI IMPBIO “Génolevures En Ligne”. The upgrade of the hardware for the database is currently supported by the CNRS Institutes INS2I and INSB together with the Aquitaine Région in the project “Génolevures : outils et données en ligne pour la Génomique Comparée”. We also thank Guilhem Savel and Pascal Ung of the System and Network Administration team in LaBRI for excellent help and advice for our next system upgrade.
PY - 2011
Y1 - 2011
N2 - The Génolevures online database (URL: http://www.genolevures.org) stores and provides the data and results obtained by the Génolevures Consortium through several campaigns of genome annotation of the yeasts in the Saccharomycotina subphylum (hemiascomycetes). This database is dedicated to large-scale comparison of these genomes, storing not only the different chromosomal elements detected in the sequences, but also the logical relations between them. The database is divided into a public part, accessible to anyone through Internet, and a private part where the Consortium members make genome annotations with our Magus annotation system; this system is used to annotate several related genomes in parallel. The public database is widely consulted and offers structured data, organized using a REST web site architecture that allows for automated requests. The implementation of the database, as well as its associated tools and methods, is evolving to cope with the influx of genome sequences produced by Next Generation Sequencing (NGS).
AB - The Génolevures online database (URL: http://www.genolevures.org) stores and provides the data and results obtained by the Génolevures Consortium through several campaigns of genome annotation of the yeasts in the Saccharomycotina subphylum (hemiascomycetes). This database is dedicated to large-scale comparison of these genomes, storing not only the different chromosomal elements detected in the sequences, but also the logical relations between them. The database is divided into a public part, accessible to anyone through Internet, and a private part where the Consortium members make genome annotations with our Magus annotation system; this system is used to annotate several related genomes in parallel. The public database is widely consulted and offers structured data, organized using a REST web site architecture that allows for automated requests. The implementation of the database, as well as its associated tools and methods, is evolving to cope with the influx of genome sequences produced by Next Generation Sequencing (NGS).
KW - Génolevures database
KW - Yeast
UR - http://www.scopus.com/inward/record.url?scp=79961171036&partnerID=8YFLogxK
U2 - 10.1016/j.crvi.2011.05.004
DO - 10.1016/j.crvi.2011.05.004
M3 - Short survey
AN - SCOPUS:79961171036
SN - 1631-0691
VL - 334
SP - 585
EP - 589
JO - Comptes Rendus - Biologies
JF - Comptes Rendus - Biologies
IS - 8-9
ER -