TY - JOUR
T1 - Restriction factor compendium for influenza A virus reveals a mechanism for evasion of autophagy
AU - Martin-Sancho, Laura
AU - Tripathi, Shashank
AU - Rodriguez-Frandsen, Ariel
AU - Pache, Lars
AU - Sanchez-Aparicio, Maite
AU - McGregor, Michael J.
AU - Haas, Kelsey M.
AU - Swaney, Danielle L.
AU - Nguyen, Thong T.
AU - Mamede, João I.
AU - Churas, Christopher
AU - Pratt, Dexter
AU - Rosenthal, Sara B.
AU - Riva, Laura
AU - Nguyen, Courtney
AU - Beltran-Raygoza, Nish
AU - Soonthornvacharin, Stephen
AU - Wang, Guojun
AU - Jimenez-Morales, David
AU - De Jesus, Paul D.
AU - Moulton, Hong M.
AU - Stein, David A.
AU - Chang, Max W.
AU - Benner, Chris
AU - Ideker, Trey
AU - Albrecht, Randy A.
AU - Hultquist, Judd F.
AU - Krogan, Nevan J.
AU - García-Sastre, Adolfo
AU - Chanda, Sumit K.
N1 - Publisher Copyright:
© 2021, The Author(s), under exclusive licence to Springer Nature Limited.
PY - 2021/10
Y1 - 2021/10
N2 - The fate of influenza A virus (IAV) infection in the host cell depends on the balance between cellular defence mechanisms and viral evasion strategies. To illuminate the landscape of IAV cellular restriction, we generated and integrated global genetic loss-of-function screens with transcriptomics and proteomics data. Our multi-omics analysis revealed a subset of both IFN-dependent and independent cellular defence mechanisms that inhibit IAV replication. Amongst these, the autophagy regulator TBC1 domain family member 5 (TBC1D5), which binds Rab7 to enable fusion of autophagosomes and lysosomes, was found to control IAV replication in vitro and in vivo and to promote lysosomal targeting of IAV M2 protein. Notably, IAV M2 was observed to abrogate TBC1D5–Rab7 binding through a physical interaction with TBC1D5 via its cytoplasmic tail. Our results provide evidence for the molecular mechanism utilised by IAV M2 protein to escape lysosomal degradation and traffic to the cell membrane, where it supports IAV budding and growth.
AB - The fate of influenza A virus (IAV) infection in the host cell depends on the balance between cellular defence mechanisms and viral evasion strategies. To illuminate the landscape of IAV cellular restriction, we generated and integrated global genetic loss-of-function screens with transcriptomics and proteomics data. Our multi-omics analysis revealed a subset of both IFN-dependent and independent cellular defence mechanisms that inhibit IAV replication. Amongst these, the autophagy regulator TBC1 domain family member 5 (TBC1D5), which binds Rab7 to enable fusion of autophagosomes and lysosomes, was found to control IAV replication in vitro and in vivo and to promote lysosomal targeting of IAV M2 protein. Notably, IAV M2 was observed to abrogate TBC1D5–Rab7 binding through a physical interaction with TBC1D5 via its cytoplasmic tail. Our results provide evidence for the molecular mechanism utilised by IAV M2 protein to escape lysosomal degradation and traffic to the cell membrane, where it supports IAV budding and growth.
UR - http://www.scopus.com/inward/record.url?scp=85115373585&partnerID=8YFLogxK
U2 - 10.1038/s41564-021-00964-2
DO - 10.1038/s41564-021-00964-2
M3 - Article
C2 - 34556855
AN - SCOPUS:85115373585
SN - 2058-5276
VL - 6
SP - 1319
EP - 1333
JO - Nature Microbiology
JF - Nature Microbiology
IS - 10
ER -