Partial correlation estimation by joint sparse regression models

Jie Peng, Pei Wang, Nengfeng Zhou, Ji Zhu

Research output: Contribution to journalArticlepeer-review

439 Scopus citations

Abstract

In this article, we propose a computationally efficient approach space (Sparse PArtial Correlation Estimation)-for selecting nonzero partial correlations under the high-dimension-low-sample-size setting. This method assumes the overall sparsity of the partial correlation matrix and employs sparse regression techniques for model fitting.We illustrate the performance of space by extensive simulation studies. It is shown that space performs well in both nonzero partial correlation selection and the identification of hub variables, and also outperforms two existing methods. We then apply space to a microarray breast cancer dataset and identify a set of hub genes that may provide important insights on genetic regulatory networks. Finally, we prove that, under a set of suitable assumptions, the proposed procedure is asymptotically consistent in terms of model selection and parameter estimation.

Original languageEnglish
Pages (from-to)735-746
Number of pages12
JournalJournal of the American Statistical Association
Volume104
Issue number486
DOIs
StatePublished - Jun 2009
Externally publishedYes

Keywords

  • Concentration network
  • Genetic regulatory network
  • High-dimension-low-sample- size
  • Lasso
  • Shooting

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