Normalization of nomenclature for peptide motifs as ligands of modular protein domains

Rein Aasland; Charles Abrams; Christophe Ampe; Linda J. Ball; Mark T. Bedford; Gianni Cesareni; Mario Gimona; James H. Hurley; Thomas Jarchau; Veli Pekka Lehto; Mark A. Lemmon; Rune Linding; Bruce J. Mayer; Makoto Nagai; Marius Sudol; Ulrich Walter; Steve J. Winder

doi:10.1016/S0014-5793(01)03295-1

Normalization of nomenclature for peptide motifs as ligands of modular protein domains

Rein Aasland, Charles Abrams, Christophe Ampe, Linda J. Ball, Mark T. Bedford, Gianni Cesareni, Mario Gimona, James H. Hurley, Thomas Jarchau, Veli Pekka Lehto, Mark A. Lemmon, Rune Linding, Bruce J. Mayer, Makoto Nagai, Marius Sudol, Ulrich Walter, Steve J. Winder

Research output: Contribution to journal › Short survey › peer-review

114 Scopus citations

Abstract

We propose a normalization of symbols and terms used to describe, accurately and succinctly, the detailed interactions between amino acid residues of pairs of interacting proteins at protein:protein (or protein:peptide) interfaces. Our aim is to unify several diverse descriptions currently in use in order to facilitate communication in the rapidly progressing field of signaling by protein domains. In order for the nomenclature to be convenient and widely used, we also suggest a parallel set of symbols restricted to the ASCII format allowing accurate parsing of the nomenclature to a computer-readable form. This proposal will be reviewed in the future and will therefore be open for the inclusion of new rules, modifications and changes.

Original language	English
Pages (from-to)	141-144
Number of pages	4
Journal	FEBS Letters
Volume	513
Issue number	1
DOIs	https://doi.org/10.1016/S0014-5793(01)03295-1
State	Published - 20 Feb 2002

Keywords

ASCII format
Glossary
Nomenclature
Peptide motif
Protein domain, specificity and recognition
Protein-protein interaction
Proteomics

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10.1016/S0014-5793(01)03295-1

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Aasland, R., Abrams, C., Ampe, C., Ball, L. J., Bedford, M. T., Cesareni, G., Gimona, M., Hurley, J. H., Jarchau, T., Lehto, V. P., Lemmon, M. A., Linding, R., Mayer, B. J., Nagai, M., Sudol, M., Walter, U., & Winder, S. J. (2002). Normalization of nomenclature for peptide motifs as ligands of modular protein domains. FEBS Letters, 513(1), 141-144. https://doi.org/10.1016/S0014-5793(01)03295-1

@article{6676ef3c8c82465da53f3e9b19035edf,

title = "Normalization of nomenclature for peptide motifs as ligands of modular protein domains",

abstract = "We propose a normalization of symbols and terms used to describe, accurately and succinctly, the detailed interactions between amino acid residues of pairs of interacting proteins at protein:protein (or protein:peptide) interfaces. Our aim is to unify several diverse descriptions currently in use in order to facilitate communication in the rapidly progressing field of signaling by protein domains. In order for the nomenclature to be convenient and widely used, we also suggest a parallel set of symbols restricted to the ASCII format allowing accurate parsing of the nomenclature to a computer-readable form. This proposal will be reviewed in the future and will therefore be open for the inclusion of new rules, modifications and changes.",

keywords = "ASCII format, Glossary, Nomenclature, Peptide motif, Protein domain, specificity and recognition, Protein-protein interaction, Proteomics",

author = "Rein Aasland and Charles Abrams and Christophe Ampe and Ball, {Linda J.} and Bedford, {Mark T.} and Gianni Cesareni and Mario Gimona and Hurley, {James H.} and Thomas Jarchau and Lehto, {Veli Pekka} and Lemmon, {Mark A.} and Rune Linding and Mayer, {Bruce J.} and Makoto Nagai and Marius Sudol and Ulrich Walter and Winder, {Steve J.}",

note = "Funding Information: Supported by grants from Human Frontier Science Program Organization and National Institutes of Health. We would like to thank Konstadinos Moissoglu for advice on Greek terms used in the nomenclature. ",

year = "2002",

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doi = "10.1016/S0014-5793(01)03295-1",

language = "English",

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pages = "141--144",

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Aasland, R, Abrams, C, Ampe, C, Ball, LJ, Bedford, MT, Cesareni, G, Gimona, M, Hurley, JH, Jarchau, T, Lehto, VP, Lemmon, MA, Linding, R, Mayer, BJ, Nagai, M, Sudol, M, Walter, U & Winder, SJ 2002, 'Normalization of nomenclature for peptide motifs as ligands of modular protein domains', FEBS Letters, vol. 513, no. 1, pp. 141-144. https://doi.org/10.1016/S0014-5793(01)03295-1

TY - JOUR

T1 - Normalization of nomenclature for peptide motifs as ligands of modular protein domains

AU - Aasland, Rein

AU - Abrams, Charles

AU - Ampe, Christophe

AU - Ball, Linda J.

AU - Bedford, Mark T.

AU - Cesareni, Gianni

AU - Gimona, Mario

AU - Hurley, James H.

AU - Jarchau, Thomas

AU - Lehto, Veli Pekka

AU - Lemmon, Mark A.

AU - Linding, Rune

AU - Mayer, Bruce J.

AU - Nagai, Makoto

AU - Sudol, Marius

AU - Walter, Ulrich

AU - Winder, Steve J.

N1 - Funding Information: Supported by grants from Human Frontier Science Program Organization and National Institutes of Health. We would like to thank Konstadinos Moissoglu for advice on Greek terms used in the nomenclature.

PY - 2002/2/20

Y1 - 2002/2/20

N2 - We propose a normalization of symbols and terms used to describe, accurately and succinctly, the detailed interactions between amino acid residues of pairs of interacting proteins at protein:protein (or protein:peptide) interfaces. Our aim is to unify several diverse descriptions currently in use in order to facilitate communication in the rapidly progressing field of signaling by protein domains. In order for the nomenclature to be convenient and widely used, we also suggest a parallel set of symbols restricted to the ASCII format allowing accurate parsing of the nomenclature to a computer-readable form. This proposal will be reviewed in the future and will therefore be open for the inclusion of new rules, modifications and changes.

AB - We propose a normalization of symbols and terms used to describe, accurately and succinctly, the detailed interactions between amino acid residues of pairs of interacting proteins at protein:protein (or protein:peptide) interfaces. Our aim is to unify several diverse descriptions currently in use in order to facilitate communication in the rapidly progressing field of signaling by protein domains. In order for the nomenclature to be convenient and widely used, we also suggest a parallel set of symbols restricted to the ASCII format allowing accurate parsing of the nomenclature to a computer-readable form. This proposal will be reviewed in the future and will therefore be open for the inclusion of new rules, modifications and changes.

KW - ASCII format

KW - Glossary

KW - Nomenclature

KW - Peptide motif

KW - Protein domain, specificity and recognition

KW - Protein-protein interaction

KW - Proteomics

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U2 - 10.1016/S0014-5793(01)03295-1

DO - 10.1016/S0014-5793(01)03295-1

M3 - Short survey

C2 - 11911894

AN - SCOPUS:18344376699

SN - 0014-5793

VL - 513

SP - 141

EP - 144

JO - FEBS Letters

JF - FEBS Letters

IS - 1

ER -

Normalization of nomenclature for peptide motifs as ligands of modular protein domains

Abstract

Keywords

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