TY - GEN
T1 - Mesh-based spherical deconvolution for physically valid fiber orientation reconstruction from diffusion-weighted MRI
AU - Patel, Vishal
AU - Shi, Yonggang
AU - Thompson, Paul
AU - Toga, Arthur
PY - 2009
Y1 - 2009
N2 - High angular resolution diffusion imaging (HARDI) methods have enabled the reconstruction of complex spin diffusion profiles in central nervous system white matter through diffusion-weighted MRI. For recovery of the underlying fiber orientations, conventional spherical deconvolution techniques based on spherical harmonics typically have difficulty producing fiber orientation distributions (FODs) that simultaneously satisfy the physical constraints of being real, symmetric, and non-negative. In this work, we propose a novel approach for HARDI reconstruction that is guaranteed to generate FODs satisfying these constraints. By using a meshed representation of the unit sphere, we formulate the spherical deconvolution as a convex optimization problem and compute the solution using a projected gradient descent algorithm. Flexible regularization is also included in our method to allow for tuning the sharpness of the reconstructed FOD. In our experiments, we present simulated results to examine the effects of varying the regularization parameters, and we illustrate the robustness of our method by applying it to several biological data sets to reconstruct known white matter fiber geometry.
AB - High angular resolution diffusion imaging (HARDI) methods have enabled the reconstruction of complex spin diffusion profiles in central nervous system white matter through diffusion-weighted MRI. For recovery of the underlying fiber orientations, conventional spherical deconvolution techniques based on spherical harmonics typically have difficulty producing fiber orientation distributions (FODs) that simultaneously satisfy the physical constraints of being real, symmetric, and non-negative. In this work, we propose a novel approach for HARDI reconstruction that is guaranteed to generate FODs satisfying these constraints. By using a meshed representation of the unit sphere, we formulate the spherical deconvolution as a convex optimization problem and compute the solution using a projected gradient descent algorithm. Flexible regularization is also included in our method to allow for tuning the sharpness of the reconstructed FOD. In our experiments, we present simulated results to examine the effects of varying the regularization parameters, and we illustrate the robustness of our method by applying it to several biological data sets to reconstruct known white matter fiber geometry.
KW - Brain
KW - Deconvolution
KW - Inverse problems
KW - Magnetic resonance imaging
KW - Optimization methods
UR - http://www.scopus.com/inward/record.url?scp=70449375152&partnerID=8YFLogxK
U2 - 10.1109/ISBI.2009.5193122
DO - 10.1109/ISBI.2009.5193122
M3 - Conference contribution
AN - SCOPUS:70449375152
SN - 9781424439324
T3 - Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009
SP - 614
EP - 617
BT - Proceedings - 2009 IEEE International Symposium on Biomedical Imaging
T2 - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009
Y2 - 28 June 2009 through 1 July 2009
ER -