Machine Learning Interface for Medical Image Analysis

Yi C. Zhang, Alexander C. Kagen

Research output: Contribution to journalArticlepeer-review

34 Scopus citations

Abstract

TensorFlow is a second-generation open-source machine learning software library with a built-in framework for implementing neural networks in wide variety of perceptual tasks. Although TensorFlow usage is well established with computer vision datasets, the TensorFlow interface with DICOM formats for medical imaging remains to be established. Our goal is to extend the TensorFlow API to accept raw DICOM images as input; 1513 DaTscan DICOM images were obtained from the Parkinson’s Progression Markers Initiative (PPMI) database. DICOM pixel intensities were extracted and shaped into tensors, or n-dimensional arrays, to populate the training, validation, and test input datasets for machine learning. A simple neural network was constructed in TensorFlow to classify images into normal or Parkinson’s disease groups. Training was executed over 1000 iterations for each cross-validation set. The gradient descent optimization and Adagrad optimization algorithms were used to minimize cross-entropy between the predicted and ground-truth labels. Cross-validation was performed ten times to produce a mean accuracy of 0.938 ± 0.047 (95 % CI 0.908–0.967). The mean sensitivity was 0.974 ± 0.043 (95 % CI 0.947–1.00) and mean specificity was 0.822 ± 0.207 (95 % CI 0.694–0.950). We extended the TensorFlow API to enable DICOM compatibility in the context of DaTscan image analysis. We implemented a neural network classifier that produces diagnostic accuracies on par with excellent results from previous machine learning models. These results indicate the potential role of TensorFlow as a useful adjunct diagnostic tool in the clinical setting.

Original languageEnglish
Pages (from-to)615-621
Number of pages7
JournalJournal of Digital Imaging
Volume30
Issue number5
DOIs
StatePublished - 1 Oct 2017
Externally publishedYes

Keywords

  • Artificial intelligence
  • Classification
  • Computer vision
  • Image analysis

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