TY - JOUR
T1 - Improved disorder prediction by combination of orthogonal approaches
AU - Schlessinger, Avner
AU - Punta, Marco
AU - Yachdav, Guy
AU - Kajan, Laszlo
AU - Rost, Burkhard
N1 - Funding Information:
Thanks to Barry Honig, Lawrence Shapiro (both Columbia), David Eliezer (Cornell) and Ravi Iyengar (Mount Sinai) for helpful discussions; to Dariusz Przybylski (Columbia) for providing preliminary information and programs; to Andrew Kernytsky (Columbia) and Amit Kessel for discussions; to David Barkan (UCSF) for helpful comments on the manuscript. Thanks to Keith Dunker (Indiana University) for his pioneering work in this field, and particular thanks to Joel Sussman (Weizmann Inst.) for extremely helpful discussions and his push to invest more effort into this field. This work was supported by the grant R01-LM07329 from the National Library of Medicine (NLM) at the NIH. Last, not least, thanks to Zoran Obradovic (Temple University), Keith Dunker (Indiana University), Phil Bourne (San Diego Univ.), and their crews for maintaining excellent databases and to all experimentalists who enabled this analysis by making their data publicly available.
PY - 2009/2/11
Y1 - 2009/2/11
N2 - Disordered proteins are highly abundant in regulatory processes such as transcription and cell-signaling. Different methods have been developed to predict protein disorder often focusing on different types of disordered regions. Here, we present MD, a novel META-Disorder prediction method that molds various sources of information predominantly obtained from orthogonal prediction methods, to significantly improve in performance over its constituents. In sustained cross-validation, MD not only outperforms its origins, but it also compares favorably to other state-of-the-art prediction methods in a variety of tests that we applied.
AB - Disordered proteins are highly abundant in regulatory processes such as transcription and cell-signaling. Different methods have been developed to predict protein disorder often focusing on different types of disordered regions. Here, we present MD, a novel META-Disorder prediction method that molds various sources of information predominantly obtained from orthogonal prediction methods, to significantly improve in performance over its constituents. In sustained cross-validation, MD not only outperforms its origins, but it also compares favorably to other state-of-the-art prediction methods in a variety of tests that we applied.
UR - http://www.scopus.com/inward/record.url?scp=84885949386&partnerID=8YFLogxK
U2 - 10.1371/journal.pone.0004433
DO - 10.1371/journal.pone.0004433
M3 - Article
AN - SCOPUS:84885949386
SN - 1932-6203
VL - 4
JO - PLoS ONE
JF - PLoS ONE
IS - 2
M1 - e4433
ER -