TY - JOUR
T1 - From noncoding variant to phenotype via SORT1 at the 1p13 cholesterol locus
AU - Musunuru, Kiran
AU - Strong, Alanna
AU - Frank-Kamenetsky, Maria
AU - Lee, Noemi E.
AU - Ahfeldt, Tim
AU - Sachs, Katherine V.
AU - Li, Xiaoyu
AU - Li, Hui
AU - Kuperwasser, Nicolas
AU - Ruda, Vera M.
AU - Pirruccello, James P.
AU - Muchmore, Brian
AU - Prokunina-Olsson, Ludmila
AU - Hall, Jennifer L.
AU - Schadt, Eric E.
AU - Morales, Carlos R.
AU - Lund-Katz, Sissel
AU - Phillips, Michael C.
AU - Wong, Jamie
AU - Cantley, William
AU - Racie, Timothy
AU - Ejebe, Kenechi G.
AU - Orho-Melander, Marju
AU - Melander, Olle
AU - Koteliansky, Victor
AU - Fitzgerald, Kevin
AU - Krauss, Ronald M.
AU - Cowan, Chad A.
AU - Kathiresan, Sekar
AU - Rader, Daniel J.
N1 - Funding Information:
Acknowledgements We thank D. Altshuler, E. Fisher and J. Maraganore for advice and guidance, and A. Akinc, J. Billheimer, R. Brown, R. Camahort, D. Cromley, E. Eduoard, I. Fuki, C. Geaney, G. Hinkle, I. Kohaar, S. Kuchimanchi, W. Lagor, F. Lau, D. Lum, M. Maier, D. Marchadier, R. Meyers, J. Millar, S. Milstein, D. Nguyen, D. Perez, D. Peters, V. Redon, A. Rigamonti, R. Schinzel, M.-S. Sun, S.-A. Toh, A. Wilson and K. Wojnoonski for assistance and suggestions. We acknowledge the National Heart, Lung, and Blood Institute (NHLBI) Gene Therapy Resource Program for providing support for viral vector production as well as the Vector Core laboratory of the University of Pennsylvania for producing the vectors. We acknowledge the members of the NHLBI Candidate Gene Association Resource (CARe) lipids working group for the contribution of association data in African Americans. This work was supported in part by a T32 grant in Cell and Molecular Training for Cardiovascular Biology from the United States National Institutes of Health (NIH), K99-HL098364 from the NIH, and the Clinician Scientist Program of the Harvard Stem Cell Institute (K.M.); a Medical Scientist Training Program grant from the NIH (A.S.); the intramural research program of the Division of Cancer Epidemiology & Genetics, National Cancer Institute, NIH (L.P.-O.); the Swedish Medical Research Council, Heart-Lung Foundation, and Påhlsson Foundation (M.O.-M., O.M.); U01-HL069757 from the NIH and research support from Quest Diagnostics, Inc. (R.M.K.); RC2-HL101864 from the NIH (S.K.); and P01-HL059407 and RC2-HL101864 from the NIH and a ‘‘Freedom to Discover’’ Unrestricted Cardiovascular Research Grant from Bristol-Myers Squibb (D.J.R.).
PY - 2010/8/5
Y1 - 2010/8/5
N2 - Recent genome-wide association studies (GWASs) have identified a locus on chromosome 1p13 strongly associated with both plasma low-density lipoprotein cholesterol (LDL-C) and myocardial infarction (MI) in humans. Here we show through a series of studies in human cohorts and human-derived hepatocytes that a common noncoding polymorphism at the 1p13 locus, rs12740374, creates a C/EBP (CCAAT/enhancer binding protein) transcription factor binding site and alters the hepatic expression of the SORT1 gene. With small interfering RNA (siRNA) knockdown and viral overexpression in mouse liver, we demonstrate that Sort1 alters plasma LDL-C and very low-density lipoprotein (VLDL) particle levels by modulating hepatic VLDL secretion. Thus, we provide functional evidence for a novel regulatory pathway for lipoprotein metabolism and suggest that modulation of this pathway may alter risk for MI in humans. We also demonstrate that common noncoding DNA variants identified by GWASs can directly contribute to clinical phenotypes.
AB - Recent genome-wide association studies (GWASs) have identified a locus on chromosome 1p13 strongly associated with both plasma low-density lipoprotein cholesterol (LDL-C) and myocardial infarction (MI) in humans. Here we show through a series of studies in human cohorts and human-derived hepatocytes that a common noncoding polymorphism at the 1p13 locus, rs12740374, creates a C/EBP (CCAAT/enhancer binding protein) transcription factor binding site and alters the hepatic expression of the SORT1 gene. With small interfering RNA (siRNA) knockdown and viral overexpression in mouse liver, we demonstrate that Sort1 alters plasma LDL-C and very low-density lipoprotein (VLDL) particle levels by modulating hepatic VLDL secretion. Thus, we provide functional evidence for a novel regulatory pathway for lipoprotein metabolism and suggest that modulation of this pathway may alter risk for MI in humans. We also demonstrate that common noncoding DNA variants identified by GWASs can directly contribute to clinical phenotypes.
UR - http://www.scopus.com/inward/record.url?scp=77955499945&partnerID=8YFLogxK
U2 - 10.1038/nature09266
DO - 10.1038/nature09266
M3 - Article
C2 - 20686566
AN - SCOPUS:77955499945
SN - 0028-0836
VL - 466
SP - 714
EP - 719
JO - Nature
JF - Nature
IS - 7307
ER -