Epigenetic regulation of brain region-specific microglia clearance activity

Pinar Ayata, Ana Badimon, Hayley J. Strasburger, Mary Kaye Duff, Sarah E. Montgomery, Yong Hwee E. Loh, Anja Ebert, Anna A. Pimenova, Brianna R. Ramirez, Andrew T. Chan, Josefa M. Sullivan, Immanuel Purushothaman, Joseph R. Scarpa, Alison M. Goate, Meinrad Busslinger, Li Shen, Bojan Losic, Anne Schaefer

Research output: Contribution to journalArticlepeer-review

237 Scopus citations


The rapid elimination of dying neurons and nonfunctional synapses in the brain is carried out by microglia, the resident myeloid cells of the brain. Here we show that microglia clearance activity in the adult brain is regionally regulated and depends on the rate of neuronal attrition. Cerebellar, but not striatal or cortical, microglia exhibited high levels of basal clearance activity, which correlated with an elevated degree of cerebellar neuronal attrition. Exposing forebrain microglia to apoptotic cells activated gene-expression programs supporting clearance activity. We provide evidence that the polycomb repressive complex 2 (PRC2) epigenetically restricts the expression of genes that support clearance activity in striatal and cortical microglia. Loss of PRC2 leads to aberrant activation of a microglia clearance phenotype, which triggers changes in neuronal morphology and behavior. Our data highlight a key role of epigenetic mechanisms in preventing microglia-induced neuronal alterations that are frequently associated with neurodegenerative and psychiatric diseases.

Original languageEnglish
Pages (from-to)1049-1060
Number of pages12
JournalNature Neuroscience
Issue number8
StatePublished - 1 Aug 2018


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