Design of versatile biochemical switches that respond to amplitude, duration, and spatial cues

Azi Lipshtat, Gomathi Jayaraman, John Cijiang He, Ravi Iyengar

Research output: Contribution to journalArticlepeer-review

29 Scopus citations

Abstract

Cells often mount ultrasensitive (switch-like) responses to stimuli. The design principles underlying many switches are not known.We computationally studied the switching behavior of GTPases, and found that this first-order kinetic system can show ultrasensitivity. Analytical solutions indicate that ultrasensitive first-order reactions can yield switches that respond to signal amplitude or duration. The three-component GTPase system is analogous to the physical fermion gas. This analogy allows for an analytical understanding of the functional capabilities of first-order ultrasensitive systems. Experiments show amplitude- and time-dependent Rap GTPase switching in response to Cannabinoid-1 receptor signal. This first-order switch arises from relative reaction rates and the concentrations ratios of the activator and deactivator of Rap. First-order ultrasensitivity is applicable to many systems where threshold for transition between states is dependent on the duration, amplitude, or location of a distal signal. We conclude that the emergence of ultrasensitivity from coupled first-order reactions provides a versatile mechanism for the design of biochemical switches.

Original languageEnglish
Pages (from-to)1247-1252
Number of pages6
JournalProceedings of the National Academy of Sciences of the United States of America
Volume107
Issue number3
DOIs
StatePublished - 19 Jan 2010

Keywords

  • GTpase
  • Signaling
  • Ultrasensitivity

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