Deformable Slice-to-Volume Registration for Reconstruction of Quantitative T2* Placental and Fetal MRI

Alena Uus; Johannes K. Steinweg; Alison Ho; Laurence H. Jackson; Joseph V. Hajnal; Mary A. Rutherford; Maria Deprez; Jana Hutter

doi:10.1007/978-3-030-60334-2_22

Deformable Slice-to-Volume Registration for Reconstruction of Quantitative T2* Placental and Fetal MRI

Alena Uus, Johannes K. Steinweg, Alison Ho, Laurence H. Jackson, Joseph V. Hajnal, Mary A. Rutherford, Maria Deprez, Jana Hutter

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

9 Scopus citations

Abstract

In 4D T2* placental MRI studies, motion correction is generally considered a prerequisite for quantitative analysis. However, the existing approaches use only global spatio-temporal alignment based on the classical 3D nonrigid registration and do not correct inter-slice motion. Alignment of T2* and T2 volumes in one reference space could also address the limitation of low resolution of T2* stacks and allow analysis of finer anatomical features. This work introduces a novel pipeline for motion correction in 4D T2* and 3D T2*+T2 placental MRI datasets based on the deformable slice-to-volume registration (DSVR) method. The pipelines are evaluated on 60 T2* placental MRI datasets.

Original language	English
Title of host publication	Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis - 1st International Workshop, ASMUS 2020, and 5th International Workshop, PIPPI 2020, Held in Conjunction with MICCAI 2020, Proceedings
Editors	Yipeng Hu, Roxane Licandro, J. Alison Noble, Jana Hutter, Andrew Melbourne, Stephen Aylward, Esra Abaci Turk, Jordina Torrents Barrena, Jordina Torrents Barrena
Publisher	Springer Science and Business Media Deutschland GmbH
Pages	222-232
Number of pages	11
ISBN (Print)	9783030603335
DOIs	https://doi.org/10.1007/978-3-030-60334-2_22
State	Published - 2020
Externally published	Yes
Event	1st International Workshop on Advances in Simplifying Medical UltraSound, ASMUS 2020, and the 5th International Workshop on Perinatal, Preterm and Paediatric Image Analysis, PIPPI 2020, held in conjunction with the 23rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2020 - Lima, Peru Duration: 4 Oct 2020 → 8 Oct 2020

Publication series

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume	12437 LNCS
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Conference

Conference	1st International Workshop on Advances in Simplifying Medical UltraSound, ASMUS 2020, and the 5th International Workshop on Perinatal, Preterm and Paediatric Image Analysis, PIPPI 2020, held in conjunction with the 23rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2020
Country/Territory	Peru
City	Lima
Period	4/10/20 → 8/10/20

Keywords

Deformable slice-to-volume registration
Motion correction
Multi-modal reconstruction
Placental and fetal MRI

Access to Document

10.1007/978-3-030-60334-2_22

Cite this

Uus, A., Steinweg, J. K., Ho, A., Jackson, L. H., Hajnal, J. V., Rutherford, M. A., Deprez, M., & Hutter, J. (2020). Deformable Slice-to-Volume Registration for Reconstruction of Quantitative T2* Placental and Fetal MRI. In Y. Hu, R. Licandro, J. A. Noble, J. Hutter, A. Melbourne, S. Aylward, E. Abaci Turk, J. Torrents Barrena, & J. Torrents Barrena (Eds.), Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis - 1st International Workshop, ASMUS 2020, and 5th International Workshop, PIPPI 2020, Held in Conjunction with MICCAI 2020, Proceedings (pp. 222-232). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 12437 LNCS). Springer Science and Business Media Deutschland GmbH. https://doi.org/10.1007/978-3-030-60334-2_22

Uus, Alena ; Steinweg, Johannes K. ; Ho, Alison et al. / Deformable Slice-to-Volume Registration for Reconstruction of Quantitative T2* Placental and Fetal MRI. Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis - 1st International Workshop, ASMUS 2020, and 5th International Workshop, PIPPI 2020, Held in Conjunction with MICCAI 2020, Proceedings. editor / Yipeng Hu ; Roxane Licandro ; J. Alison Noble ; Jana Hutter ; Andrew Melbourne ; Stephen Aylward ; Esra Abaci Turk ; Jordina Torrents Barrena ; Jordina Torrents Barrena. Springer Science and Business Media Deutschland GmbH, 2020. pp. 222-232 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

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title = "Deformable Slice-to-Volume Registration for Reconstruction of Quantitative T2* Placental and Fetal MRI",

abstract = "In 4D T2* placental MRI studies, motion correction is generally considered a prerequisite for quantitative analysis. However, the existing approaches use only global spatio-temporal alignment based on the classical 3D nonrigid registration and do not correct inter-slice motion. Alignment of T2* and T2 volumes in one reference space could also address the limitation of low resolution of T2* stacks and allow analysis of finer anatomical features. This work introduces a novel pipeline for motion correction in 4D T2* and 3D T2*+T2 placental MRI datasets based on the deformable slice-to-volume registration (DSVR) method. The pipelines are evaluated on 60 T2* placental MRI datasets.",

keywords = "Deformable slice-to-volume registration, Motion correction, Multi-modal reconstruction, Placental and fetal MRI",

author = "Alena Uus and Steinweg, {Johannes K.} and Alison Ho and Jackson, {Laurence H.} and Hajnal, {Joseph V.} and Rutherford, {Mary A.} and Maria Deprez and Jana Hutter",

note = "Publisher Copyright: {\textcopyright} 2020, Springer Nature Switzerland AG.; 1st International Workshop on Advances in Simplifying Medical UltraSound, ASMUS 2020, and the 5th International Workshop on Perinatal, Preterm and Paediatric Image Analysis, PIPPI 2020, held in conjunction with the 23rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2020 ; Conference date: 04-10-2020 Through 08-10-2020",

year = "2020",

doi = "10.1007/978-3-030-60334-2_22",

language = "English",

isbn = "9783030603335",

series = "Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)",

publisher = "Springer Science and Business Media Deutschland GmbH",

pages = "222--232",

editor = "Yipeng Hu and Roxane Licandro and Noble, {J. Alison} and Jana Hutter and Andrew Melbourne and Stephen Aylward and {Abaci Turk}, Esra and {Torrents Barrena}, Jordina and {Torrents Barrena}, Jordina",

booktitle = "Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis - 1st International Workshop, ASMUS 2020, and 5th International Workshop, PIPPI 2020, Held in Conjunction with MICCAI 2020, Proceedings",

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}

Uus, A, Steinweg, JK, Ho, A, Jackson, LH, Hajnal, JV, Rutherford, MA, Deprez, M & Hutter, J 2020, Deformable Slice-to-Volume Registration for Reconstruction of Quantitative T2* Placental and Fetal MRI. in Y Hu, R Licandro, JA Noble, J Hutter, A Melbourne, S Aylward, E Abaci Turk, J Torrents Barrena & J Torrents Barrena (eds), Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis - 1st International Workshop, ASMUS 2020, and 5th International Workshop, PIPPI 2020, Held in Conjunction with MICCAI 2020, Proceedings. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 12437 LNCS, Springer Science and Business Media Deutschland GmbH, pp. 222-232, 1st International Workshop on Advances in Simplifying Medical UltraSound, ASMUS 2020, and the 5th International Workshop on Perinatal, Preterm and Paediatric Image Analysis, PIPPI 2020, held in conjunction with the 23rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2020, Lima, Peru, 4/10/20. https://doi.org/10.1007/978-3-030-60334-2_22

Deformable Slice-to-Volume Registration for Reconstruction of Quantitative T2* Placental and Fetal MRI. / Uus, Alena; Steinweg, Johannes K.; Ho, Alison et al.
Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis - 1st International Workshop, ASMUS 2020, and 5th International Workshop, PIPPI 2020, Held in Conjunction with MICCAI 2020, Proceedings. ed. / Yipeng Hu; Roxane Licandro; J. Alison Noble; Jana Hutter; Andrew Melbourne; Stephen Aylward; Esra Abaci Turk; Jordina Torrents Barrena; Jordina Torrents Barrena. Springer Science and Business Media Deutschland GmbH, 2020. p. 222-232 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 12437 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

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AU - Uus, Alena

AU - Steinweg, Johannes K.

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AU - Jackson, Laurence H.

AU - Hajnal, Joseph V.

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BT - Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis - 1st International Workshop, ASMUS 2020, and 5th International Workshop, PIPPI 2020, Held in Conjunction with MICCAI 2020, Proceedings

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A2 - Licandro, Roxane

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A2 - Torrents Barrena, Jordina

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Y2 - 4 October 2020 through 8 October 2020

ER -

Uus A, Steinweg JK, Ho A, Jackson LH, Hajnal JV, Rutherford MA et al. Deformable Slice-to-Volume Registration for Reconstruction of Quantitative T2* Placental and Fetal MRI. In Hu Y, Licandro R, Noble JA, Hutter J, Melbourne A, Aylward S, Abaci Turk E, Torrents Barrena J, Torrents Barrena J, editors, Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis - 1st International Workshop, ASMUS 2020, and 5th International Workshop, PIPPI 2020, Held in Conjunction with MICCAI 2020, Proceedings. Springer Science and Business Media Deutschland GmbH. 2020. p. 222-232. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). doi: 10.1007/978-3-030-60334-2_22

Deformable Slice-to-Volume Registration for Reconstruction of Quantitative T2* Placental and Fetal MRI

Abstract

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Keywords

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Cite this