Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers (Genome Biology (2017) 18 (182) DOI: 10.1186/s13059-017-1299-7)

Alexa B.R. McIntyre; Rachid Ounit; Ebrahim Afshinnekoo; Robert J. Prill; Elizabeth Hénaff; Noah Alexander; Samuel S. Minot; David Danko; Jonathan Foox; Sofia Ahsanuddin; Scott Tighe; Nur A. Hasan; Poorani Subramanian; Kelly Moffat; Shawn Levy; Stefano Lonardi; Nick Greenfield; Rita R. Colwell; Gail L. Rosen; Christopher E. Mason

doi:10.1186/s13059-019-1687-2

Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers (Genome Biology (2017) 18 (182) DOI: 10.1186/s13059-017-1299-7)

Alexa B.R. McIntyre, Rachid Ounit, Ebrahim Afshinnekoo, Robert J. Prill, Elizabeth Hénaff, Noah Alexander, Samuel S. Minot, David Danko, Jonathan Foox, Sofia Ahsanuddin, Scott Tighe, Nur A. Hasan, Poorani Subramanian, Kelly Moffat, Shawn Levy, Stefano Lonardi, Nick Greenfield, Rita R. Colwell, Gail L. Rosen, Christopher E. Mason

Research output: Contribution to journal › Comment/debate

Abstract

Following publication of the original article [1], the authors would like to highlight the following two corrections. 1) The updated “Availability of data and materials” declaration to the article: The datasets and scripts supporting the conclusions of this article are freely and publicly available through the IMMSA server, ftp://ftpprivate. ncbi.nlm.nih.gov/nist-immsa/IMMSA/ Scripts used for analysis and generating figures are available at: https://scu.med.cornell.edu/git/ abm237/benchmarking_metagenomic_classifiers 2) The authors would like to clarify that the kraken db build command in the manuscript is for the bacterial database; the command for the standard db is available through the kraken manual: krakenbuild -standard -db $DBNAME.

Original language	English
Article number	72
Journal	Genome Biology
Volume	20
Issue number	1
DOIs	https://doi.org/10.1186/s13059-019-1687-2
State	Published - 5 Apr 2019
Externally published	Yes

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McIntyre, A. B. R., Ounit, R., Afshinnekoo, E., Prill, R. J., Hénaff, E., Alexander, N., Minot, S. S., Danko, D., Foox, J., Ahsanuddin, S., Tighe, S., Hasan, N. A., Subramanian, P., Moffat, K., Levy, S., Lonardi, S., Greenfield, N., Colwell, R. R., Rosen, G. L., & Mason, C. E. (2019). Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers (Genome Biology (2017) 18 (182) DOI: 10.1186/s13059-017-1299-7). Genome Biology, 20(1), Article 72. https://doi.org/10.1186/s13059-019-1687-2

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title = "Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers (Genome Biology (2017) 18 (182) DOI: 10.1186/s13059-017-1299-7)",

abstract = "Following publication of the original article [1], the authors would like to highlight the following two corrections. 1) The updated “Availability of data and materials” declaration to the article: The datasets and scripts supporting the conclusions of this article are freely and publicly available through the IMMSA server, ftp://ftpprivate. ncbi.nlm.nih.gov/nist-immsa/IMMSA/ Scripts used for analysis and generating figures are available at: https://scu.med.cornell.edu/git/ abm237/benchmarking_metagenomic_classifiers 2) The authors would like to clarify that the kraken db build command in the manuscript is for the bacterial database; the command for the standard db is available through the kraken manual: krakenbuild -standard -db $DBNAME.",

author = "McIntyre, {Alexa B.R.} and Rachid Ounit and Ebrahim Afshinnekoo and Prill, {Robert J.} and Elizabeth H{\'e}naff and Noah Alexander and Minot, {Samuel S.} and David Danko and Jonathan Foox and Sofia Ahsanuddin and Scott Tighe and Hasan, {Nur A.} and Poorani Subramanian and Kelly Moffat and Shawn Levy and Stefano Lonardi and Nick Greenfield and Colwell, {Rita R.} and Rosen, {Gail L.} and Mason, {Christopher E.}",

note = "Publisher Copyright: {\textcopyright} 2019 The Author(s).",

year = "2019",

month = apr,

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doi = "10.1186/s13059-019-1687-2",

language = "English",

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McIntyre, ABR, Ounit, R, Afshinnekoo, E, Prill, RJ, Hénaff, E, Alexander, N, Minot, SS, Danko, D, Foox, J, Ahsanuddin, S, Tighe, S, Hasan, NA, Subramanian, P, Moffat, K, Levy, S, Lonardi, S, Greenfield, N, Colwell, RR, Rosen, GL & Mason, CE 2019, 'Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers (Genome Biology (2017) 18 (182) DOI: 10.1186/s13059-017-1299-7)', Genome Biology, vol. 20, no. 1, 72. https://doi.org/10.1186/s13059-019-1687-2

TY - JOUR

T1 - Correction to

T2 - Comprehensive benchmarking and ensemble approaches for metagenomic classifiers (Genome Biology (2017) 18 (182) DOI: 10.1186/s13059-017-1299-7)

AU - McIntyre, Alexa B.R.

AU - Ounit, Rachid

AU - Afshinnekoo, Ebrahim

AU - Prill, Robert J.

AU - Hénaff, Elizabeth

AU - Alexander, Noah

AU - Minot, Samuel S.

AU - Danko, David

AU - Foox, Jonathan

AU - Ahsanuddin, Sofia

AU - Tighe, Scott

AU - Hasan, Nur A.

AU - Subramanian, Poorani

AU - Moffat, Kelly

AU - Levy, Shawn

AU - Lonardi, Stefano

AU - Greenfield, Nick

AU - Colwell, Rita R.

AU - Rosen, Gail L.

AU - Mason, Christopher E.

PY - 2019/4/5

Y1 - 2019/4/5

N2 - Following publication of the original article [1], the authors would like to highlight the following two corrections. 1) The updated “Availability of data and materials” declaration to the article: The datasets and scripts supporting the conclusions of this article are freely and publicly available through the IMMSA server, ftp://ftpprivate. ncbi.nlm.nih.gov/nist-immsa/IMMSA/ Scripts used for analysis and generating figures are available at: https://scu.med.cornell.edu/git/ abm237/benchmarking_metagenomic_classifiers 2) The authors would like to clarify that the kraken db build command in the manuscript is for the bacterial database; the command for the standard db is available through the kraken manual: krakenbuild -standard -db $DBNAME.

AB - Following publication of the original article [1], the authors would like to highlight the following two corrections. 1) The updated “Availability of data and materials” declaration to the article: The datasets and scripts supporting the conclusions of this article are freely and publicly available through the IMMSA server, ftp://ftpprivate. ncbi.nlm.nih.gov/nist-immsa/IMMSA/ Scripts used for analysis and generating figures are available at: https://scu.med.cornell.edu/git/ abm237/benchmarking_metagenomic_classifiers 2) The authors would like to clarify that the kraken db build command in the manuscript is for the bacterial database; the command for the standard db is available through the kraken manual: krakenbuild -standard -db $DBNAME.

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DO - 10.1186/s13059-019-1687-2

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AN - SCOPUS:85063909141

SN - 1474-7596

VL - 20

JO - Genome Biology

JF - Genome Biology

IS - 1

M1 - 72

ER -

Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers (Genome Biology (2017) 18 (182) DOI: 10.1186/s13059-017-1299-7)

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