Constructing Lattice Models of Protein Chains with Side Groups

Boris A. Reva; Dmitrii S. Rykunov; Arthur J. Olson; Alexei V. Finkelstein

doi:10.1089/cmb.1995.2.527

Constructing Lattice Models of Protein Chains with Side Groups

Boris A. Reva
, Dmitrii S. Rykunov
, Arthur J. Olson
, Alexei V. Finkelstein

Research output: Contribution to journal › Article › peer-review

12 Scopus citations

Abstract

An algorithm to construct lattice models of polymers with side chains is presented. A search for the global minimum of the error function for a given lattice-to-chain orientation is done by dynamic programming, making the search both fast and complete. Application of the algorithm is illustrated by constructing lattice models for 12 proteins of different sizes and structural types.

Original language	English
Pages (from-to)	527-535
Number of pages	9
Journal	Journal of Computational Biology
Volume	2
Issue number	4
DOIs	https://doi.org/10.1089/cmb.1995.2.527
State	Published - 1995
Externally published	Yes

Keywords

dynamic programming
lattice model
protein structure

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10.1089/cmb.1995.2.527

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title = "Constructing Lattice Models of Protein Chains with Side Groups",

abstract = "An algorithm to construct lattice models of polymers with side chains is presented. A search for the global minimum of the error function for a given lattice-to-chain orientation is done by dynamic programming, making the search both fast and complete. Application of the algorithm is illustrated by constructing lattice models for 12 proteins of different sizes and structural types.",

keywords = "dynamic programming, lattice model, protein structure",

author = "Reva, \{Boris A.\} and Rykunov, \{Dmitrii S.\} and Olson, \{Arthur J.\} and Finkelstein, \{Alexei V.\}",

year = "1995",

doi = "10.1089/cmb.1995.2.527",

language = "English",

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pages = "527--535",

journal = "Journal of Computational Biology",

issn = "1066-5277",

publisher = "SAGE Publications Ltd",

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TY - JOUR

T1 - Constructing Lattice Models of Protein Chains with Side Groups

AU - Reva, Boris A.

AU - Rykunov, Dmitrii S.

AU - Olson, Arthur J.

AU - Finkelstein, Alexei V.

PY - 1995

Y1 - 1995

N2 - An algorithm to construct lattice models of polymers with side chains is presented. A search for the global minimum of the error function for a given lattice-to-chain orientation is done by dynamic programming, making the search both fast and complete. Application of the algorithm is illustrated by constructing lattice models for 12 proteins of different sizes and structural types.

AB - An algorithm to construct lattice models of polymers with side chains is presented. A search for the global minimum of the error function for a given lattice-to-chain orientation is done by dynamic programming, making the search both fast and complete. Application of the algorithm is illustrated by constructing lattice models for 12 proteins of different sizes and structural types.

KW - dynamic programming

KW - lattice model

KW - protein structure

UR - https://www.scopus.com/pages/publications/0029442553

U2 - 10.1089/cmb.1995.2.527

DO - 10.1089/cmb.1995.2.527

M3 - Article

C2 - 8634904

AN - SCOPUS:0029442553

SN - 1066-5277

VL - 2

SP - 527

EP - 535

JO - Journal of Computational Biology

JF - Journal of Computational Biology

IS - 4

ER -

Constructing Lattice Models of Protein Chains with Side Groups

Abstract

Keywords

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