Constructing Lattice Models of Protein Chains with Side Groups

Boris A. Reva, Dmitrii S. Rykunov, Arthur J. Olson, Alexei V. Finkelstein

Research output: Contribution to journalArticlepeer-review

11 Scopus citations

Abstract

An algorithm to construct lattice models of polymers with side chains is presented. A search for the global minimum of the error function for a given lattice-to-chain orientation is done by dynamic programming, making the search both fast and complete. Application of the algorithm is illustrated by constructing lattice models for 12 proteins of different sizes and structural types.

Original languageEnglish
Pages (from-to)527-535
Number of pages9
JournalJournal of Computational Biology
Volume2
Issue number4
DOIs
StatePublished - 1995
Externally publishedYes

Keywords

  • dynamic programming
  • lattice model
  • protein structure

Fingerprint

Dive into the research topics of 'Constructing Lattice Models of Protein Chains with Side Groups'. Together they form a unique fingerprint.

Cite this