ClusterDraw web server: A tool to identify and visualize clusters of binding motifs for transcription factors

Dmitri Papatsenko

doi:10.1093/bioinformatics/btm047

ClusterDraw web server: A tool to identify and visualize clusters of binding motifs for transcription factors

Dmitri Papatsenko

Research output: Contribution to journal › Article › peer-review

26 Scopus citations

Abstract

ClusterDraw is a program aimed to identification of binding sites and binding-site clusters. Major difference of the ClusterDraw from existing tools is its ability to scan a wide range of parameter values and weigh statistical significance of all possible clusters, smaller than a selected size. The program produces graphs along with decorated FASTA files. ClusterDraw web server is available at the following URL: http://flydev.berkeley.edu/cgi-bin/cld/submit.cgi.

Original language	English
Pages (from-to)	1032-1034
Number of pages	3
Journal	Bioinformatics
Volume	23
Issue number	8
DOIs	https://doi.org/10.1093/bioinformatics/btm047
State	Published - 15 Apr 2007
Externally published	Yes

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10.1093/bioinformatics/btm047

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title = "ClusterDraw web server: A tool to identify and visualize clusters of binding motifs for transcription factors",

abstract = "ClusterDraw is a program aimed to identification of binding sites and binding-site clusters. Major difference of the ClusterDraw from existing tools is its ability to scan a wide range of parameter values and weigh statistical significance of all possible clusters, smaller than a selected size. The program produces graphs along with decorated FASTA files. ClusterDraw web server is available at the following URL: http://flydev.berkeley.edu/cgi-bin/cld/submit.cgi.",

author = "Dmitri Papatsenko",

note = "Funding Information: Author thanks Mike Levine, who participated in algorithm improvement and provided data for testing. The work was supported by grant from Moore foundation to the Center of Integrated Genomics, University of California, Berkeley. Funding to pay the Open Access publication charges was provided by the Center for Integrative Genomics, University of California, Berkeley. The Center is supported by a grant from Moore Foundation.",

year = "2007",

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doi = "10.1093/bioinformatics/btm047",

language = "English",

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AU - Papatsenko, Dmitri

N1 - Funding Information: Author thanks Mike Levine, who participated in algorithm improvement and provided data for testing. The work was supported by grant from Moore foundation to the Center of Integrated Genomics, University of California, Berkeley. Funding to pay the Open Access publication charges was provided by the Center for Integrative Genomics, University of California, Berkeley. The Center is supported by a grant from Moore Foundation.

PY - 2007/4/15

Y1 - 2007/4/15

N2 - ClusterDraw is a program aimed to identification of binding sites and binding-site clusters. Major difference of the ClusterDraw from existing tools is its ability to scan a wide range of parameter values and weigh statistical significance of all possible clusters, smaller than a selected size. The program produces graphs along with decorated FASTA files. ClusterDraw web server is available at the following URL: http://flydev.berkeley.edu/cgi-bin/cld/submit.cgi.

AB - ClusterDraw is a program aimed to identification of binding sites and binding-site clusters. Major difference of the ClusterDraw from existing tools is its ability to scan a wide range of parameter values and weigh statistical significance of all possible clusters, smaller than a selected size. The program produces graphs along with decorated FASTA files. ClusterDraw web server is available at the following URL: http://flydev.berkeley.edu/cgi-bin/cld/submit.cgi.

UR - https://www.scopus.com/pages/publications/34249676873

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DO - 10.1093/bioinformatics/btm047

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SP - 1032

EP - 1034

JO - Bioinformatics

JF - Bioinformatics

IS - 8

ER -

ClusterDraw web server: A tool to identify and visualize clusters of binding motifs for transcription factors

Abstract

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