BioNetGen 2.2: Advances in rule-based modeling

Leonard A. Harris, Justin S. Hogg, José Juan Tapia, John A.P. Sekar, Sanjana Gupta, Ilya Korsunsky, Arshi Arora, Dipak Barua, Robert P. Sheehan, James R. Faeder

Research output: Contribution to journalArticlepeer-review

111 Scopus citations

Abstract

Summary: BioNetGen is an open-source software package for rule-based modeling of complex biochemical systems. Version 2.2 of the software introduces numerous new features for both model specification and simulation. Here, we report on these additions, discussing how they facilitate the construction, simulation and analysis of larger and more complex models than previously possible.

Original languageEnglish
Pages (from-to)3366-3368
Number of pages3
JournalBioinformatics
Volume32
Issue number21
DOIs
StatePublished - 1 Nov 2016
Externally publishedYes

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