Assuring the quality of next-generation sequencing in clinical laboratory practice

Amy S. Gargis; Lisa Kalman; Meredith W. Berry; David P. Bick; David P. Dimmock; Tina Hambuch; Fei Lu; Elaine Lyon; Karl V. Voelkerding; Barbara A. Zehnbauer; Richa Agarwala; Sarah F. Bennett; Bin Chen; Ephrem L.H. Chin; John G. Compton; Soma Das; Daniel H. Farkas; Matthew J. Ferber; Birgit H. Funke; Manohar R. Furtado; Lilia M. Ganova-Raeva; Ute Geigenmüller; Sandra J. Gunselman; Madhuri R. Hegde; Philip L.F. Johnson; Andrew Kasarskis; Shashikant Kulkarni; Thomas Lenk; C. S.Jonathan Liu; Megan Manion; Teri A. Manolio; Elaine R. Mardis; Jason D. Merker; Mangalathu S. Rajeevan; Martin G. Reese; Heidi L. Rehm; Birgitte B. Simen; Joanne M. Yeakley; Justin M. Zook; Ira M. Lubin

doi:10.1038/nbt.2403

Assuring the quality of next-generation sequencing in clinical laboratory practice

Amy S. Gargis, Lisa Kalman, Meredith W. Berry, David P. Bick, David P. Dimmock, Tina Hambuch, Fei Lu, Elaine Lyon, Karl V. Voelkerding, Barbara A. Zehnbauer, Richa Agarwala, Sarah F. Bennett, Bin Chen, Ephrem L.H. Chin, John G. Compton, Soma Das, Daniel H. Farkas, Matthew J. Ferber, Birgit H. Funke, Manohar R. FurtadoLilia M. Ganova-Raeva, Ute Geigenmüller, Sandra J. Gunselman, Madhuri R. Hegde, Philip L.F. Johnson, Andrew Kasarskis, Shashikant Kulkarni, Thomas Lenk, C. S.Jonathan Liu, Megan Manion, Teri A. Manolio, Elaine R. Mardis, Jason D. Merker, Mangalathu S. Rajeevan, Martin G. Reese, Heidi L. Rehm, Birgitte B. Simen, Joanne M. Yeakley, Justin M. Zook, Ira M. Lubin

Research output: Contribution to journal › Letter › peer-review

394 Scopus citations

Original language	English
Pages (from-to)	1033-1036
Number of pages	4
Journal	Nature Biotechnology
Volume	30
Issue number	11
DOIs	https://doi.org/10.1038/nbt.2403
State	Published - Nov 2012
Externally published	Yes

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10.1038/nbt.2403

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Gargis, A. S., Kalman, L., Berry, M. W., Bick, D. P., Dimmock, D. P., Hambuch, T., Lu, F., Lyon, E., Voelkerding, K. V., Zehnbauer, B. A., Agarwala, R., Bennett, S. F., Chen, B., Chin, E. L. H., Compton, J. G., Das, S., Farkas, D. H., Ferber, M. J., Funke, B. H., ... Lubin, I. M. (2012). Assuring the quality of next-generation sequencing in clinical laboratory practice. Nature Biotechnology, 30(11), 1033-1036. https://doi.org/10.1038/nbt.2403

@article{28db7d0652a2476da0ef5a19d33fc5a1,

title = "Assuring the quality of next-generation sequencing in clinical laboratory practice",

author = "Gargis, {Amy S.} and Lisa Kalman and Berry, {Meredith W.} and Bick, {David P.} and Dimmock, {David P.} and Tina Hambuch and Fei Lu and Elaine Lyon and Voelkerding, {Karl V.} and Zehnbauer, {Barbara A.} and Richa Agarwala and Bennett, {Sarah F.} and Bin Chen and Chin, {Ephrem L.H.} and Compton, {John G.} and Soma Das and Farkas, {Daniel H.} and Ferber, {Matthew J.} and Funke, {Birgit H.} and Furtado, {Manohar R.} and Ganova-Raeva, {Lilia M.} and Ute Geigenm{\"u}ller and Gunselman, {Sandra J.} and Hegde, {Madhuri R.} and Johnson, {Philip L.F.} and Andrew Kasarskis and Shashikant Kulkarni and Thomas Lenk and Liu, {C. S.Jonathan} and Megan Manion and Manolio, {Teri A.} and Mardis, {Elaine R.} and Merker, {Jason D.} and Rajeevan, {Mangalathu S.} and Reese, {Martin G.} and Rehm, {Heidi L.} and Simen, {Birgitte B.} and Yeakley, {Joanne M.} and Zook, {Justin M.} and Lubin, {Ira M.}",

note = "Funding Information: The authors thank E. Mansfield, N. Aziz, P. Keller, J. Kaufman, S. Ghosh, R. Leach, J. Robinson, A. Felsenfeld, M. Salit and E. Highsmith for their help and support. The findings and conclusions in this report are those of the authors and do not necessarily represent the views of the CDC or the US Agency for Toxic Substances and Disease Registry. The identification of certain commercial equipment, instruments or materials in this document does not imply recommendation or endorsement by the US National Institute of Standards and Technology, nor does it imply that the products identified are necessarily the best available for the purpose. The research was supported in part by an appointment to A.S.G. to the Research Participation Program at the CDC administered by the Oak Ridge Institute for Science and Education through an interagency agreement between the US Department of Energy and the CDC.",

year = "2012",

month = nov,

doi = "10.1038/nbt.2403",

language = "English",

volume = "30",

pages = "1033--1036",

journal = "Nature Biotechnology",

issn = "1087-0156",

publisher = "Nature Research",

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Gargis, AS, Kalman, L, Berry, MW, Bick, DP, Dimmock, DP, Hambuch, T, Lu, F, Lyon, E, Voelkerding, KV, Zehnbauer, BA, Agarwala, R, Bennett, SF, Chen, B, Chin, ELH, Compton, JG, Das, S, Farkas, DH, Ferber, MJ, Funke, BH, Furtado, MR, Ganova-Raeva, LM, Geigenmüller, U, Gunselman, SJ, Hegde, MR, Johnson, PLF, Kasarskis, A, Kulkarni, S, Lenk, T, Liu, CSJ, Manion, M, Manolio, TA, Mardis, ER, Merker, JD, Rajeevan, MS, Reese, MG, Rehm, HL, Simen, BB, Yeakley, JM, Zook, JM & Lubin, IM 2012, 'Assuring the quality of next-generation sequencing in clinical laboratory practice', Nature Biotechnology, vol. 30, no. 11, pp. 1033-1036. https://doi.org/10.1038/nbt.2403

TY - JOUR

T1 - Assuring the quality of next-generation sequencing in clinical laboratory practice

AU - Gargis, Amy S.

AU - Kalman, Lisa

AU - Berry, Meredith W.

AU - Bick, David P.

AU - Dimmock, David P.

AU - Hambuch, Tina

AU - Lu, Fei

AU - Lyon, Elaine

AU - Voelkerding, Karl V.

AU - Zehnbauer, Barbara A.

AU - Agarwala, Richa

AU - Bennett, Sarah F.

AU - Chen, Bin

AU - Chin, Ephrem L.H.

AU - Compton, John G.

AU - Das, Soma

AU - Farkas, Daniel H.

AU - Ferber, Matthew J.

AU - Funke, Birgit H.

AU - Furtado, Manohar R.

AU - Ganova-Raeva, Lilia M.

AU - Geigenmüller, Ute

AU - Gunselman, Sandra J.

AU - Hegde, Madhuri R.

AU - Johnson, Philip L.F.

AU - Kasarskis, Andrew

AU - Kulkarni, Shashikant

AU - Lenk, Thomas

AU - Liu, C. S.Jonathan

AU - Manion, Megan

AU - Manolio, Teri A.

AU - Mardis, Elaine R.

AU - Merker, Jason D.

AU - Rajeevan, Mangalathu S.

AU - Reese, Martin G.

AU - Rehm, Heidi L.

AU - Simen, Birgitte B.

AU - Yeakley, Joanne M.

AU - Zook, Justin M.

AU - Lubin, Ira M.

N1 - Funding Information: The authors thank E. Mansfield, N. Aziz, P. Keller, J. Kaufman, S. Ghosh, R. Leach, J. Robinson, A. Felsenfeld, M. Salit and E. Highsmith for their help and support. The findings and conclusions in this report are those of the authors and do not necessarily represent the views of the CDC or the US Agency for Toxic Substances and Disease Registry. The identification of certain commercial equipment, instruments or materials in this document does not imply recommendation or endorsement by the US National Institute of Standards and Technology, nor does it imply that the products identified are necessarily the best available for the purpose. The research was supported in part by an appointment to A.S.G. to the Research Participation Program at the CDC administered by the Oak Ridge Institute for Science and Education through an interagency agreement between the US Department of Energy and the CDC.

PY - 2012/11

Y1 - 2012/11

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U2 - 10.1038/nbt.2403

DO - 10.1038/nbt.2403

M3 - Letter

C2 - 23138292

AN - SCOPUS:84869429716

SN - 1087-0156

VL - 30

SP - 1033

EP - 1036

JO - Nature Biotechnology

JF - Nature Biotechnology

IS - 11

ER -