TY - JOUR
T1 - Activity of convalescent and vaccine serum against SARS-CoV-2 Omicron
AU - PSP-PARIS Study Group
AU - Carreño, Juan Manuel
AU - Alshammary, Hala
AU - Tcheou, Johnstone
AU - Singh, Gagandeep
AU - Raskin, Ariel J.
AU - Kawabata, Hisaaki
AU - Sominsky, Levy A.
AU - Clark, Jordan J.
AU - Adelsberg, Daniel C.
AU - Bielak, Dominika A.
AU - Gonzalez-Reiche, Ana Silvia
AU - Dambrauskas, Nicholas
AU - Vigdorovich, Vladimir
AU - Alburquerque, B.
AU - Amoako, A. A.
AU - Banu, R.
AU - Beach, K. F.
AU - Bermúdez-González, M. C.
AU - Cai, G. Y.
AU - Ceglia, I.
AU - Cognigni, C.
AU - Farrugia, K.
AU - Gleason, C. R.
AU - van de Guchte, A.
AU - Kleiner, G.
AU - Khalil, Z.
AU - Lyttle, N.
AU - Mendez, W. A.
AU - Mulder, L. C.F.
AU - Oostenink, A.
AU - Rooker, A.
AU - Salimbangon, A. T.
AU - Saksena, M.
AU - Paniz-Mondolfi, A. E.
AU - Polanco, J.
AU - Srivastava, Komal
AU - Sather, D. Noah
AU - Sordillo, Emilia Mia
AU - Bajic, Goran
AU - van Bakel, Harm
AU - Simon, Viviana
AU - Krammer, Florian
N1 - Funding Information:
Acknowledgements We thank the study participants for their generosity and willingness to participate in longitudinal COVID-19 research studies. We thank the Rapid Response Laboratories and the Molecular Microbiology Laboratory of the Mount Sinai Health System for their assistance in the expeditious transfer of SARS-CoV-2 positive diagnostic specimen; R. A. Albrecht for oversight of the conventional BSL3 biocontainment facility; J. Kimpel and D. von Laer for sharing B.1.1.529 virus isolates (even though they could not be included in this work); P. Palese, C. Cordon-Cardo, D. Charney, D. Reich and K. Davis for their leadership and support throughout the COVID-19 pandemic; and D. Caughey for expert administrative assistance. This work is part of the PARIS/SPARTA studies funded by the NIAID Collaborative Influenza Vaccine Innovation Centers (CIVIC) contract 75N93019C00051. In addition, this work was also partially funded by the NIAID Centers of Excellence for Influenza Research and Response (CEIRR) contract and 75N93021C00014 by anonymous donors. The Mount Sinai Pathogen Surveillance Program is supported by institutional School of Medicine and Hospital funds. This work is part of the NIAID SARS-CoV-2 Assessment of Viral Evolution (SAVE) program.
Funding Information:
We thank the study participants for their generosity and willingness to participate in longitudinal COVID-19 research studies. We thank the Rapid Response Laboratories and the Molecular Microbiology Laboratory of the Mount Sinai Health System for their assistance in the expeditious transfer of SARS-CoV-2 positive diagnostic specimen; R. A. Albrecht for oversight of the conventional BSL3 biocontainment facility; J. Kimpel and D. von Laer for sharing B.1.1.529 virus isolates (even though they could not be included in this work); P. Palese, C. Cordon-Cardo, D. Charney, D. Reich and K. Davis for their leadership and?support?throughout the COVID-19 pandemic; and D. Caughey for expert administrative assistance. This work is part of the PARIS/SPARTA studies funded by the NIAID Collaborative Influenza Vaccine Innovation Centers (CIVIC) contract 75N93019C00051. In addition, this work was also partially funded by the NIAID Centers of Excellence for Influenza Research and Response (CEIRR) contract and 75N93021C00014 by anonymous donors. The Mount Sinai Pathogen Surveillance Program is supported by institutional School of Medicine and Hospital funds. This work is part of the NIAID SARS-CoV-2 Assessment of Viral Evolution (SAVE) program.
Publisher Copyright:
© 2021, The Author(s), under exclusive licence to Springer Nature Limited.
PY - 2022/2/24
Y1 - 2022/2/24
N2 - The Omicron (B.1.1.529) variant of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) was initially identified in November 2021 in South Africa and Botswana, as well as in a sample from a traveller from South Africa in Hong Kong1,2. Since then, Omicron has been detected globally. This variant appears to be at least as infectious as Delta (B.1.617.2), has already caused superspreader events3, and has outcompeted Delta within weeks in several countries and metropolitan areas. Omicron hosts an unprecedented number of mutations in its spike gene and early reports have provided evidence for extensive immune escape and reduced vaccine effectiveness2,4–6. Here we investigated the virus-neutralizing and spike protein-binding activity of sera from convalescent, double mRNA-vaccinated, mRNA-boosted, convalescent double-vaccinated and convalescent boosted individuals against wild-type, Beta (B.1.351) and Omicron SARS-CoV-2 isolates and spike proteins. Neutralizing activity of sera from convalescent and double-vaccinated participants was undetectable or very low against Omicron compared with the wild-type virus, whereas neutralizing activity of sera from individuals who had been exposed to spike three or four times through infection and vaccination was maintained, although at significantly reduced levels. Binding to the receptor-binding and N-terminal domains of the Omicron spike protein was reduced compared with binding to the wild type in convalescent unvaccinated individuals, but was mostly retained in vaccinated individuals.
AB - The Omicron (B.1.1.529) variant of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) was initially identified in November 2021 in South Africa and Botswana, as well as in a sample from a traveller from South Africa in Hong Kong1,2. Since then, Omicron has been detected globally. This variant appears to be at least as infectious as Delta (B.1.617.2), has already caused superspreader events3, and has outcompeted Delta within weeks in several countries and metropolitan areas. Omicron hosts an unprecedented number of mutations in its spike gene and early reports have provided evidence for extensive immune escape and reduced vaccine effectiveness2,4–6. Here we investigated the virus-neutralizing and spike protein-binding activity of sera from convalescent, double mRNA-vaccinated, mRNA-boosted, convalescent double-vaccinated and convalescent boosted individuals against wild-type, Beta (B.1.351) and Omicron SARS-CoV-2 isolates and spike proteins. Neutralizing activity of sera from convalescent and double-vaccinated participants was undetectable or very low against Omicron compared with the wild-type virus, whereas neutralizing activity of sera from individuals who had been exposed to spike three or four times through infection and vaccination was maintained, although at significantly reduced levels. Binding to the receptor-binding and N-terminal domains of the Omicron spike protein was reduced compared with binding to the wild type in convalescent unvaccinated individuals, but was mostly retained in vaccinated individuals.
UR - http://www.scopus.com/inward/record.url?scp=85122700911&partnerID=8YFLogxK
U2 - 10.1038/s41586-022-04399-5
DO - 10.1038/s41586-022-04399-5
M3 - Article
C2 - 35016197
AN - SCOPUS:85122700911
SN - 0028-0836
VL - 602
SP - 682
EP - 688
JO - Nature
JF - Nature
IS - 7898
ER -