Samira Asgari

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Samira Asgari

PhD

Calculated based on number of publications stored in Pure and citations from Scopus
20162024

Research activity per year

Search results

  • 2024

    Genetic relations between type 1 diabetes, coronary artery disease and leukocyte counts

    Adebekun, J., Nadig, A., Saarah, P., Asgari, S., Kachuri, L. & Alagpulinsa, D. A., Nov 2024, In: Diabetologia. 67, 11, p. 2518-2529 12 p.

    Research output: Contribution to journal › Article › peer-review

    1 Scopus citations

  • High-dimensional phenotyping to define the genetic basis of cellular morphology

    Tegtmeyer, M., Arora, J., Asgari, S., Cimini, B. A., Nadig, A., Peirent, E., Liyanage, D., Way, G. P., Weisbart, E., Nathan, A., Amariuta, T., Eggan, K., Haghighi, M., McCarroll, S. A., O’Connor, L., Carpenter, A. E., Singh, S., Nehme, R. & Raychaudhuri, S., Dec 2024, In: Nature Communications. 15, 1, 347.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    11 Scopus citations

  • History of tuberculosis disease is associated with genetic regulatory variation in Peruvians

    Nieto-Caballero, V. E., Reijneveld, J. F., Ruvalcaba, A., Innocenzi, G., Abeydeera, N., Asgari, S., Lopez, K., Iwany, S. K., Luo, Y., Nathan, A., Fernandez-Salinas, D., Chiñas, M., Huang, C. C., Zhang, Z., León, S. R., Calderon, R. I., Lecca, L., Budzik, J. M., Murray, M. & Van Rhijn, I. & 4 others, Raychaudhuri, S., Moody, D. B., Suliman, S. & Gutierrez-Arcelus, M., 13 Jun 2024, In: PLoS Genetics. 20, 6 June, e1011313.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Paired analysis of host and pathogen genomes identifies determinants of human tuberculosis

    Luo, Y., Huang, C. C., Howard, N. C., Wang, X., Liu, Q., Li, X., Zhu, J., Amariuta, T., Asgari, S., Ishigaki, K., Calderon, R., Raman, S., Ramnarine, A. K., Mayfield, J. A., Moody, D. B., Lecca, L., Fortune, S. M., Murray, M. B. & Raychaudhuri, S., Dec 2024, In: Nature Communications. 15, 1, 10393.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Prehistoric events might explain European multiple sclerosis risk

    Asgari, S. & Pousaz, L. A., 1 Jan 2024, In: Nature. 625, 7994, p. 247-249 3 p.

    Research output: Contribution to journal › Comment/debate

    1 Scopus citations
  • 2023

    Admixture mapping of peripheral artery disease in a Dominican population reveals a putative risk locus on 2q35

    Cullina, S., Wojcik, G. L., Shemirani, R., Klarin, D., Gorman, B. R., Sorokin, E. P., Gignoux, C. R., Belbin, G. M., Pyarajan, S., Asgari, S., Tsao, P. S., Damrauer, S. M., Abul-Husn, N. S. & Kenny, E. E., 2023, In: Frontiers in Genetics. 14, 1181167.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    2 Scopus citations
  • 2022

    Addressing the challenges of polygenic scores in human genetic research

    Novembre, J., Stein, C., Asgari, S., Gonzaga-Jauregui, C., Landstrom, A., Lemke, A., Li, J., Mighton, C., Taylor, M. & Tishkoff, S., 1 Dec 2022, In: American Journal of Human Genetics. 109, 12, p. 2095-2100 6 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    21 Scopus citations

  • Co-varying neighborhood analysis identifies cell populations associated with phenotypes of interest from single-cell transcriptomics

    Reshef, Y. A., Rumker, L., Kang, J. B., Nathan, A., Korsunsky, I., Asgari, S., Murray, M. B., Moody, D. B. & Raychaudhuri, S., Mar 2022, In: Nature Biotechnology. 40, 3, p. 355-363 9 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    23 Scopus citations

  • Higher native Peruvian genetic ancestry proportion is associated with tuberculosis progression risk

    Asgari, S., Luo, Y., Huang, C. C., Zhang, Z., Calderon, R., Jimenez, J., Yataco, R., Contreras, C., Galea, J. T., Lecca, L., Jones, D., Moody, D. B., Murray, M. B. & Raychaudhuri, S., 13 Jul 2022, In: Cell Genomics. 2, 7, 100151.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    6 Scopus citations

  • Single-cell eQTL models reveal dynamic T cell state dependence of disease loci

    Nathan, A., Asgari, S., Ishigaki, K., Valencia, C., Amariuta, T., Luo, Y., Beynor, J. I., Baglaenko, Y., Suliman, S., Price, A. L., Lecca, L., Murray, M. B., Moody, D. B. & Raychaudhuri, S., 2 Jun 2022, In: Nature. 606, 7912, p. 120-128 9 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    73 Scopus citations
  • 2021

    A sex-specific evolutionary interaction between ADCY9 and CETP

    Gamache, I., Legault, M. A., Grenier, J. C., Sanchez, R., Rhéaume, E., Asgari, S., Barhdadi, A., Zada, Y. F., Trochet, H., Luo, Y., Lecca, L., Murray, M., Raychaudhuri, S., Tardif, J. C., Dubé, M. P. & Hussin, J. G., Oct 2021, In: eLife. 10, e69198.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    8 Scopus citations

  • From Your Nose to Your Toes: A Review of Severe Acute Respiratory Syndrome Coronavirus 2 Pandemic‒Associated Pernio

    COVID Human Genetic Effort, Dec 2021, In: Journal of Investigative Dermatology. 141, 12, p. 2791-2796 6 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    24 Scopus citations

  • Human genetic variants identified that affect COVID susceptibility and severity

    Asgari, S. & Pousaz, L. A., 1 Dec 2021, In: Nature. 600, 7889, p. 390-391 2 p.

    Research output: Contribution to journal › Comment/debate

    Open Access
    17 Scopus citations

  • Multimodally profiling memory T cells from a tuberculosis cohort identifies cell state associations with demographics, environment and disease

    Nathan, A., Beynor, J. I., Baglaenko, Y., Suliman, S., Ishigaki, K., Asgari, S., Huang, C. C., Luo, Y., Zhang, Z., Lopez, K., Lindestam Arlehamn, C. S., Ernst, J. D., Jimenez, J., Calderón, R. I., Lecca, L., Van Rhijn, I., Moody, D. B., Murray, M. B. & Raychaudhuri, S., Jun 2021, In: Nature Immunology. 22, 6, p. 781-793 13 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    53 Scopus citations
  • 2020

    A positively selected FBN1 missense variant reduces height in Peruvian individuals

    Asgari, S., Luo, Y., Akbari, A., Belbin, G. M., Li, X., Harris, D. N., Selig, M., Bartell, E., Calderon, R., Slowikowski, K., Contreras, C., Yataco, R., Galea, J. T., Jimenez, J., Coit, J. M., Farroñay, C., Nazarian, R. M., O’Connor, T. D., Dietz, H. C. & Hirschhorn, J. N. & 6 others, Guio, H., Lecca, L., Kenny, E. E., Freeman, E. E., Murray, M. B. & Raychaudhuri, S., 11 Jun 2020, In: Nature. 582, 7811, p. 234-239 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    35 Scopus citations

  • Whole-exome sequencing for the identification of rare variants in primary immunodeficiency genes in children with sepsis: A prospective, population-based cohort study

    for the European Childhood Life-threatening Infectious Disease Study (EUCLIDS) Consortium and the Swiss Paediatric Sepsis Study, 15 Nov 2020, In: Clinical Infectious Diseases. 71, 10, p. E614-E623

    Research output: Contribution to journal › Article › peer-review

    Open Access
    16 Scopus citations
  • 2019

    Early progression to active tuberculosis is a highly heritable trait driven by 3q23 in Peruvians

    Luo, Y., Suliman, S., Asgari, S., Amariuta, T., Baglaenko, Y., Martínez-Bonet, M., Ishigaki, K., Gutierrez-Arcelus, M., Calderon, R., Lecca, L., León, S. R., Jimenez, J., Yataco, R., Contreras, C., Galea, J. T., Becerra, M., Nejentsev, S., Nigrovic, P. A., Moody, D. B. & Murray, M. B. & 1 others, Raychaudhuri, S., 1 Dec 2019, In: Nature Communications. 10, 1, 3765.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    39 Scopus citations

  • Human genomics of acute liver failure due to hepatitis B virus infection: An exome sequencing study in liver transplant recipients

    Asgari, S., Chaturvedi, N., Scepanovic, P., Hammer, C., Semmo, N., Giostra, E., Müllhaupt, B., Angus, P., Thompson, A. J., Moradpour, D. & Fellay, J., Feb 2019, In: Journal of Viral Hepatitis. 26, 2, p. 271-277 7 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    4 Scopus citations
  • 2017

    Severe viral respiratory infections in children with IFIH1 loss-of-function mutations

    Asgari, S., Schlapbach, L. J., Anchisi, S., Hammer, C., Bartha, I., Junier, T., Mottet-Osman, G., Posfay-Barbe, K. M., Longchamp, D., Stocker, M., Cordey, S., Kaiser, L., Riedel, T., Kenna, T., Long, D., Schibler, A., Telenti, A., Tapparel, C., McLaren, P. J. & Garcin, D. & 1 others, Fellay, J., 1 Aug 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 31, p. 8342-8347 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    114 Scopus citations
  • 2016

    Corrigendum: Exome sequencing reveals primary immunodeficiencies in children with community-acquired pseudomonas aeruginosa sepsis [Front Immunol, 7, 357, (2016)] doi:10.3389/fimmu.2016.00357

    Asgari, S., McLaren, P. J., Peake, J., Wong, M., Wong, R., Bartha, I., Francis, J. R., Abarca, K., Gelderman, K. A., Agyeman, P., Aebi, C., Berger, C., Fellay, J. & Schlapbach, L. J., 27 Oct 2016, In: Frontiers in Immunology. 7, OCT, 447.

    Research output: Contribution to journal › Comment/debate

    Open Access
    2 Scopus citations

  • Exome sequencing reveals primary immunodeficiencies in children with community-acquired Pseudomonas aeruginosa sepsis

    The Swiss Pediatric Sepsis Study, 20 Sep 2016, In: Frontiers in Immunology. 7, SEP, 357.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    24 Scopus citations

  • The SIB Swiss Institute of bioinformatics' resources: Focus on curated databases

    Bultet, L. A., Aguilar-Rodríguez, J., Ahrens, C. H., Ahrné, E. L., Ai, N., Aimo, L., Akalin, A., Aleksiev, T., Alocci, D., Altenhoff, A., Alves, I., Ambrosini, G., Pedone, P. A., Angelino, P., Anisimova, M., Appel, R., Argoud-Puy, G., Arnold, K., Arpat, B. & Artimo, P. & 658 others, Ascencao, K., Auchincloss, A., Axelsen, K., Gerritsen, V. B., Bairoch, A., Bansal, P., Baratin, D., Barbato, A., Barbié, V., Barras, D., Barreiro, M., Barret, S., Bastian, F., Neto, T. B., Baudis, M., Beaudoing, E., Beckmann, J. S., Bekkar, A. K., Ben Hamida Cammoun, L., Benmohammed, S., Bernard, M., Bertelli, C., Bertoni, M., Bienert, S., Bignucolo, O., Bilbao, A., Bilican, A., Blank, D., Blatter, M. C., Blum, L., Bocquet, J., Boeckmann, B., Bolleman, J. T., Bordoli, L., Bosshard, L., Bouchet, G., Bougueleret, L., Boutet, E., Bovigny, C., Bratulic, S., Breuza, L., Bridge, A. J., Britan, A., Brito, F., Frazão, J. B., Bruggmann, R., Bucher, P., Burdet, F., Burger, L., Cabello, E. M., Gomez, R. M. C., Calderon, S., Cannarozzi, G., Carl, S., Casas, C. C., Catherinet, S., Périer, R. C., Charpilloz, C., Chaskar, P. D., Chen, W., Pepe, A. C., Chopard, B., Chu, H. Y., Civic, N., Claassen, M., Clottu, S., Colombo, M., Cosandier, I., Coudert, E., Crespo, I., Creus, M., Cuche, B., Cuendet, M. A., Cusin, I., Daga, N., Daina, A., Dauvillier, J. Ô., David, F., Davydov, I., De Sa Ricca Manadelo Ferreira, M., De Beer, T., De Castro, E., De Santana, C., Delafontaine, J., Delorenzi, M., Delucinge-Vivier, C., Demirel, Ö., Derham, R., Dermitzakis, E. M., Dib, L., Diene, S., Dilek, N., Dilmi, J., Domagalski, M. J., Dorier, J., Dornevil, D., Dousse, A., Dreos, R., Duchen, P., Roggli, P. D., Duperret, I. D., Durinx, C., Duvaud, S., Engler, R., Erkek, S., López, P. E., Estreicher, A., Excoffier, L., Fabbretti, R., Falcone, J. L., Falquet, L., Famiglietti, M. L., Ferreira, A. M., Feuermann, M., Filliettaz, M., Flegel, V., Foucal, A., Franceschini, A., Fucile, G., Gaidatzis, D., Garcia, V., Gasteiger, E., Gateau, A., Gatti, L., Gaudet, P., Gaudinat, A., Gehant, S., Gfeller, D., Gharib, W. H., Ghraichy, M., Gidoin, C., Gil, M., Gleizes, A., Gobeill, J., Gonnet, G., Gos, A., Gotz, L., Gouy, A., Grbic, D., Groux, R., Gruaz-Gumowski, N., Grun, D., Gschwind, A., Guex, N., Gupta, S., Gétaz, M., Haake, D., Haas, J., Hatzimanikatis, V., Heckel, G., Gardiol, D. F. H., Hinard, V., Hinz, U., Homicsko, K., Horlacher, O., Hosseini, S. R., Hotz, H. R., Hulo, C., Hundsrucker, C., Ibberson, M., Ilmjärv, S., Ioannidis, V., Ioannidis, P., Iseli, C., Ivanek, R., Iwaszkiewicz, J., Jacquet, P., Jacquot, M., Jagannathan, V., Jan, M., Jensen, J., Johansson, M. U., Johner, N., Jungo, F., Junier, T., Kahraman, A., Katsantoni, M., Keller, G., Kerhornou, A., Khalid, F., Klingbiel, D., Komljenovic, A., Kriventseva, E., Kryuchkova, N., Kumar, S., Kutalik, Z., Kuznetsov, D., Kuzyakiv, R., Lane, L., Lara, V., Ledesma, L., Leleu, M., Lemercier, P., Lew, D., Lieberherr, D., Liechti, R., Lisacek, F., Lischer, H., Litsios, G., Liu, J., Lombardot, T., Macé, A., Maffioletti, S., Mahi, M. A., Maiolo, M., Majjigapu, S. R., Malmström, L., Mangold, V., Marek, D., Mariethoz, J., Marin, R., Martin, O., Martin, X., Martín-Campos, T., Mary, C., Masclaux, F., Masson, P., Meier, C., Messina, A., Lenoir, M. M., Meyer, X., Michel, P. A., Michielin, O., Milanese, A., Missiaglia, E., Perez, J. M., Caria, V. M., Moret, P., Moretti, S., Morgat, A., Mottaz, A., Mottin, L., Mouscaz, Y., Mueller, M., Murri, R., Mylonas, R., Neuenschwander, S., Nikitin, F., Niknejad, A., Nouspikel, N., Nso, L. N., Okoniewski, M., Omasits, U., Paccaud, B., Pachkov, M., Paesano, S. G., Pagni, M., Palagi, P. M., Pasche, E., Payne, J. L., Pedruzzi, I., Peischl, S., Peitsch, M., Perlini, S., Pilbout, S., Podvinec, M., Pohlmann, R., Polizzi, D., Potter, D., Poux, S., Pozzato, M., Pradervand, S., Praz, V., Pruess, M., Pujadas, E., Racle, J., Raschi, M., Ratib, O., Rausell, A., De Laval, V. R., Redaschi, N., Rempfer, C., Ren, G., Vahdati, R. A. R., Rib, L., Grognuz, O. R., Altimiras, E. R., Rivoire, C., Robin, T., Robinson-Rechavi, M., Rodrigues, J., Roechert, B., Roelli, P., Romano, V., Rossier, G., Roth, A., Rougemont, J., Roux, J., Royo, H., Ruch, P., Ruinelli, M., Sater, M. R. A., Röhrig, U. F., Rüeger, S., Salamin, N., Sankar, M., Sarkar, N., Saxenhofer, M., Schaeffer, M., Schaerli, Y., Schaper, E., Schmid, A., Schmid, E., Schmid, C., Schmid, M., Schmidt, S., Schmocker, D., Schneider, M., Schuepbach, T., Schwede, T., Schütz, F., Sengstag, T., Serrano, M., Sethi, A., Shahmirzadi, O., Sigrist, C., Silvestro, D., Neto, F. A. S., Simillion, C., Simonovic, M., Skunca, N., Sluzek, K., Soneson, C., Sprouffske, K., Stadler, M., Staehli, S., Stevenson, B., Stockinger, H., Straszewski, J., Stricker, T., Studer, G., Stutz, A., Suffiotti, M., Sundaram, S., Szklarczyk, D., Övenyi, P. S., Tegenfeldt, F., Teixeira, D., Tellenbach, S., Smith, A. A. T., Tognolli, M., Topolsky, I., Van Du Tran, T., Tsantoulis, P., Tzika, A. C., Agote, A. U., Van Nimwegen, E., Von Mering, C., Varadarajan, A., Veranneman, M., Verbregue, L., Veuthey, A. L., Vishnyakova, D., Vyas, R., Wagner, A., Walther, D., Wan, H. W., Wang, M., Waterhouse, R., Waterhouse, A., Wicki, A., Wigger, L., Wirapati, P., Witschi, U., Wyder, S., Wyler, K., Wüthrich, D., Xenarios, I., Yamada, K., Yan, Z., Yasrebi, H., Zahn, M., Zangger, N., Zdobnov, E., Zerzion, D., Zoete, V., Zoller, S., Abriata, L., Aebischer, T., Akhmedov, M., Filho, A. A. M., Andreozzi, S., Appel, N., Armand, F., Arribas, A., Asgari, S., Ataman, M., Audagnotto, M., Aydin, D., Bady, P., Bank, C., Barac, D., Bargeton, B., Barido-Sottani, J., Barillari, C., Bartha, I., Bean, A., Becker, J., Beerenwinkel, N., Bellement, G., Benedetti, F., Bergmann, S., Berneche, S., Bevers, R., Biasse, D., Bichsel, M., Bieler, J., Piccini, A. P. B., Do Amaral, M. B., Bolliger, C., Boskova, V., Brown, A., Bryois, J., Buil, A., Cannavo, R., Cardner, M., Carelli, F. N., Carmona, S., Cascione, L., Chakrabarti, A., Chaturvedi, N., Choobdar, S., Clivaz, C., Constantinescu, S., Corre, T., Quezada, D. C. C., Croce, R., Cuendet, A., Cui, J., Dainese, R., Dal Peraro, M., Dallavilla, T., De Oliveira, L., Delaleu, N., Delaneau, O., Deplancke, B., Dharmarajan, L., Diekmann, M., Dimitrakopoulos, C., Dimitriades-Schmutz, B., Dimitrova, Y., Dirmeier, S., Dobay, M. P., Dougoud, M., Duc, J., Dumont, G., Du Plessis, L., Dörr, D., Elfstroem, K., Elmer, F. J., Ewing, G. B., Fanaswala, I., Fellay, J., Feller, C., Fengos, G., Ferrer, A., Fiaux, S., Field, C., Finci, I., Fofonjka, A., Fonti, G., Fried, P., Frochaux, M., Fuentes, J., Galbusera, L., Galimberti, M., Garcia-Albornoz, M., Garcia-Escudero, R., Garieri, M., Georgieva, L., Ghiurcuta, C. G., Ghosh, S., Gnann, A., Gnuegge, R., Golumbeanu, M., Gomez, H., Goudet, J. Ô., Gruber, A. J., Gruhl, F., Guethe, S., Guillot, E., Guimarães, J., Gumienny, R. W., Gunawan, R., Gustafson, K., Gypas, F., Hadadi, N., Hameri, T., Hammer, C., Heer, F., Heller, D. M., Hersch, M., Hofmann, A. L., Howald, C., Hutter, S., Iber, D., Irwin, K., Jahn, K., Jedlinski, D., Jethava, V., Jorjani, H., Julou, T., Kaessmann, H., Kalantzi, A., Kanitz, A., Kapopoulou, A., Karamasioti, E., Karimaddini, Z., Keller, I., Kiparissides, A., Kohler, M., Kousathanas, A., Kuipers, J., Kupczyk, P., Kwee, I., Kühnert, D., Lakshmanan, L. N., Lamparter, D., Lang, B., Laurent, S., Laurent, S., Leigh, D., Lin, Y., Lindsay, H., Link, V., Linnik, J., Liphardt, T., Liu, Y., Loetscher, A., Luomi, A. O., Lykov, K., Machlab, D., Magnus, C., Maillard-Wermelinger, A., Malafeev, A., Malaspinas, A. S., Parera, R. M., Manesso, E., Manukyan, L., Mapelli, S. N., Marbach, D., Lopez, M. J. M., Wynn, M. M., Martin, G., Martins, A. F., Matthes, K., Mazza, C., McDaid, A., Mermet, J. Ô., Michos, O., Milinkovitch, M. C., Misios, A., Miskovic, L., Mitov, V., Mitra, A., Mittal, N., Montazeri, H., Moret, B., Naef, F., Nair, N., Nicolas, D. L., Nicolet, S., Noh, H., Nowicka, M., Oeyaas, O., Omidi, S., Ongen, H., Ormond, L., Ottoz, D., Panousis, N., Gao, N. P., Modarres, H. P., Pečerska, J., Vieira, J. P., Pivkin, I., Planet, E., Céspedes, S. P., Pradhan, R., Prados, J., Racko, D., Radigois, M. F., Rasmussen, D., Riba, A., Rinn, B., Rivoal, M., Robinson, M., Rossi, S., Rudolf, F., Rueedi, R., Ruscheweyh, H. J., Rybinski, M., Rzepiela, A. J., Sakoparnig, T., San Román Rincón, M. M., Savoglidis, G., Scepanovic, P., Schaad, O., Schleiss, R., Schmich, F., Schmidt, R., Schulthess, S., Schwalie, P. C., Seifert, D., Seijo, M., Shao, M., Shim, H., Singer, J., Sobel, J., Soh, K. C., Flitman, R. S., Soto, S., Sousa, V., Stadler, T., Stasiak, A., Stefani, A., Steger, Y., Stelling, J., Stopka, A., Stévant, I., Sunnaker, M., Syed, A. P., Tamo, G., Tanaka, S., Theiler, G., Thorball, C. A. W., Thurnherr, T., Ccenhua, M. R. T., Tidin, O., Tokic, M., Riera, M. T., Tomasini, M., Tymoshenko, S., Ud-Dean, M., Urchueguia, A., Quintero, N. V., Vinckenbosch, L., Viñuela, A., Vollmer, J., Voordijk, S., Wang, J., Wang, Z., Warnefors, M., Weber, L. M., Wegmann, D., Whitehead, E., Wicky, A., Widmer, L., Ye, M., Yerly, F., Yeung, J., Yordanov, P., Zavolan, M., Zehnder, T., Zhang, C., Zhou, X., Zisaki, A., Zoller, B. & Zollinger, A., 2016, In: Nucleic Acids Research. 44, D1, p. D27-D37

    Research output: Contribution to journal › Article › peer-review

    Open Access
    45 Scopus citations