Ali Bashir

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ASSISTANT PROFESSOR | Genetics and Genomic Sciences

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BS, University of California, Berkeley PhD, University of California, San Diego

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1 Similar Profiles

2 Finished

Methods for Extracting and Analyzing Highly Complex Regions of the Genome - Applications to the IGH locus
Bashir, A. & Sharp, A.
National Institute of Allergy and Infectious Diseases
1/07/16 → 30/06/19
Project: Research
Investigating genomic factors and microbiome features that impact CDI transmission and prognosis
Van Bakel, H. & Bashir, A.
National Institute of Allergy and Infectious Diseases
15/06/15 → 31/05/21
Project: Research

45 Article
1 Conference contribution
1 Comment/debate
1 Editorial

Characterization of the immunoglobulin lambda chain locus from diverse populations reveals extensive genetic variation
Gibson, W. S., Rodriguez, O. L., Shields, K., Silver, C. A., Dorgham, A., Emery, M., Deikus, G., Sebra, R., Eichler, E. E., Bashir, A., Smith, M. L. & Watson, C. T., Feb 2023, In: Genes and Immunity. 24, 1, p. 21-31 11 p.
Research output: Contribution to journal › Article › peer-review
NPSV: A simulation-driven approach to genotyping structural variants in whole-genome sequencing data
Linderman, M. D., Paudyal, C., Shakeel, M., Kelley, W., Bashir, A. & Gelb, B. D., 1 Jul 2021, In: GigaScience. 10, 7, giab046.
Research output: Contribution to journal › Article › peer-review

Open Access
2 Scopus citations
A Novel Framework for Characterizing Genomic Haplotype Diversity in the Human Immunoglobulin Heavy Chain Locus
Rodriguez, O. L., Gibson, W. S., Parks, T., Emery, M., Powell, J., Strahl, M., Deikus, G., Auckland, K., Eichler, E. E., Marasco, W. A., Sebra, R., Sharp, A. J., Smith, M. L., Bashir, A. & Watson, C. T., 23 Sep 2020, In: Frontiers in Immunology. 11, 2136.
Research output: Contribution to journal › Article › peer-review

Open Access
27 Scopus citations
A robust benchmark for detection of germline large deletions and insertions
Zook, J. M., Hansen, N. F., Olson, N. D., Chapman, L., Mullikin, J. C., Xiao, C., Sherry, S., Koren, S., Phillippy, A. M., Boutros, P. C., Sahraeian, S. M. E., Huang, V., Rouette, A., Alexander, N., Mason, C. E., Hajirasouliha, I., Ricketts, C., Lee, J., Tearle, R., Fiddes, I. T., & 30 othersBarrio, A. M., Wala, J., Carroll, A., Ghaffari, N., Rodriguez, O. L., Bashir, A., Jackman, S., Farrell, J. J., Wenger, A. M., Alkan, C., Soylev, A., Schatz, M. C., Garg, S., Church, G., Marschall, T., Chen, K., Fan, X., English, A. C., Rosenfeld, J. A., Zhou, W., Mills, R. E., Sage, J. M., Davis, J. R., Kaiser, M. D., Oliver, J. S., Catalano, A. P., Chaisson, M. J. P., Spies, N., Sedlazeck, F. J. & Salit, M., 1 Nov 2020, In: Nature Biotechnology. 38, 11, p. 1347-1355 9 p.
Research output: Contribution to journal › Article › peer-review
103 Scopus citations
Author Correction: A robust benchmark for detection of germline large deletions and insertions (Nature Biotechnology, (2020), 38, 11, (1347-1355), 10.1038/s41587-020-0538-8)
Zook, J. M., Hansen, N. F., Olson, N. D., Chapman, L., Mullikin, J. C., Xiao, C., Sherry, S., Koren, S., Phillippy, A. M., Boutros, P. C., Sahraeian, S. M. E., Huang, V., Rouette, A., Alexander, N., Mason, C. E., Hajirasouliha, I., Ricketts, C., Lee, J., Tearle, R., Fiddes, I. T., & 30 othersBarrio, A. M., Wala, J., Carroll, A., Ghaffari, N., Rodriguez, O. L., Bashir, A., Jackman, S., Farrell, J. J., Wenger, A. M., Alkan, C., Soylev, A., Schatz, M. C., Garg, S., Church, G., Marschall, T., Chen, K., Fan, X., English, A. C., Rosenfeld, J. A., Zhou, W., Mills, R. E., Sage, J. M., Davis, J. R., Kaiser, M. D., Oliver, J. S., Catalano, A. P., Chaisson, M. J. P., Spies, N., Sedlazeck, F. J. & Salit, M., 1 Nov 2020, In: Nature Biotechnology. 38, 11, p. 1357 1 p.
Research output: Contribution to journal › Comment/debate

Open Access

Australia Patent: Google Files Application for 'Methods and compositions for protein and peptide sequencing'
Ali Bashir
8/03/22
1 item of Media coverage
Press/Media
Machine-learning how to create better AAV gene delivery vehicles
Ali Bashir
11/02/21
2 items of Media coverage
Press/Media

Ali Bashir

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Methods for Extracting and Analyzing Highly Complex Regions of the Genome - Applications to the IGH locus

Investigating genomic factors and microbiome features that impact CDI transmission and prognosis

Characterization of the immunoglobulin lambda chain locus from diverse populations reveals extensive genetic variation

NPSV: A simulation-driven approach to genotyping structural variants in whole-genome sequencing data

A Novel Framework for Characterizing Genomic Haplotype Diversity in the Human Immunoglobulin Heavy Chain Locus

A robust benchmark for detection of germline large deletions and insertions

Author Correction: A robust benchmark for detection of germline large deletions and insertions (Nature Biotechnology, (2020), 38, 11, (1347-1355), 10.1038/s41587-020-0538-8)

Australia Patent: Google Files Application for 'Methods and compositions for protein and peptide sequencing'

Machine-learning how to create better AAV gene delivery vehicles

Ali Bashir

Personal profile

Headline

Biography

Fingerprint

Network

Projects

Research output

Press/Media