Pathology, Molecular and Cell-Based Medicine

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  • 2023

    Combining Multiple Ground Truth Annotations for Segmentation Training for Oral Cavity Cancer

    Folmsbee, J., Brandwein-Weber, M. & Doyle, S., 2023, Medical Imaging 2023: Digital and Computational Pathology. Tomaszewski, J. E. & Ward, A. D. (eds.). SPIE, 1247112. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12471).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2021

    Comparing architectural features between heuristically human-annotated and Artificial Intelligence (AI) generated tumor and satellite labels in early-stage oral cavity cancer

    Balachandran, D., Brandwein-Weber, M., Folmsbee, J. & Doyle, S., 2021, Medical Imaging 2021: Digital Pathology. Tomaszewski, J. E. & Ward, A. D. (eds.). SPIE, 116030X. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11603).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Whole slide semantic segmentation: Large scale active learning for digital pathology

    Folmsbee, J., Brandwein-Weber, M. & Doyle, S., 2021, Medical Imaging 2021: Digital Pathology. Tomaszewski, J. E. & Ward, A. D. (eds.). SPIE, 116030G. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11603).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2019

    Fragile neural networks: The importance of image standardization for deep learning in digital pathology

    Folmsbee, J., Johnson, S., Liu, X., Brandwein-Weber, M. & Doyle, S., 2019, Medical Imaging 2019: Digital Pathology. Tomaszewski, J. E. & Ward, A. D. (eds.). SPIE, 1095613. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10956).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    9 Scopus citations

  • Spectroscopic analysis with a monolithic micro-structured microsphere fiber probe

    Holler, S., Haig, B., Riviere, R., Vaccarelli, M., Donovan, M. J., Sobrero, M., Miles, B. A. & Sanzari, M. A., 2019, Advanced Environmental, Chemical, and Biological Sensing Technologies XV. Vo-Dinh, T. (ed.). SPIE, 110070B. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 11007).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2018

    Active deep learning: Improved training efficiency of convolutional neural networks for tissue classification in oral cavity cancer

    Folmsbee, J., Liu, X., Brandwein-Weber, M. & Doyle, S., 23 May 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 770-773 4 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    68 Scopus citations

  • Comparing Immunofluorescent versus HE Glandular Architecture Features in Prognostic Models from Prostate Biopsies

    Khan, F. M., Scott, R., Donovan, M. & Fernandez, G., 26 Oct 2018, 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2018. Institute of Electrical and Electronics Engineers Inc., p. 838-841 4 p. 8512292. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2018-July).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Ensemble Network for Region Identification in Breast Histopathology Slides

    Marami, B., Prastawa, M., Chan, M., Donovan, M., Fernandez, G. & Zeineh, J., 2018, Image Analysis and Recognition - 15th International Conference, ICIAR 2018, Proceedings. ter Haar Romeny, B., Karray, F. & Campilho, A. (eds.). Springer Verlag, p. 861-868 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10882 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    23 Scopus citations
  • 2017

    Spatially resolved Raman spectroscopy of head and neck squamous cell carcinoma

    Holler, S., Haig, B., Donovan, M. J., Sobrero, M. & Miles, B. A., 2017, Bio-Optics: Design and Application, BODA 2017. Optica Publishing Group (formerly OSA), (Optics InfoBase Conference Papers; vol. Part F62-BODA 2017).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2016

    Digital replicators emerge from a self-organizing prebiotic world

    Greenbaum, B. & Pargellis, A. N., 2016, Proceedings of the Artificial Life Conference 2016, ALIFE 2016. Gershenson, C., Froese, T., Siqueiros, J. M., Aguilar, W., Izquierdo, E. J. & Hiroki, S. (eds.). MIT Press Journals, (Proceedings of the Artificial Life Conference 2016, ALIFE 2016).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations

  • Pathological Gleason prediction through gland ring morphometry in immunofluorescent prostate cancer images

    Scott, R., Khan, F. M., Zeineh, J., Donovan, M. & Fernandez, G., 2016, Medical Imaging 2016: Digital Pathology. Madabhushi, A. & Gurcan, M. N. (eds.). SPIE, 97910V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9791).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2015

    Immune systems in computer Virology

    Bonfante, G., El-Aqqad, M., Greenbaum, B. & Hoyrup, M., 2015, Evolving Computability - 11th Conference on Computability in Europe, CiE 2015, Proceedings. Mitrana, V., Soskova, M. & Beckmann, A. (eds.). Springer Verlag, p. 127-136 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9136).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Integration of co-localized glandular morphometry and protein biomarker expression in immunofluorescent images for prostate cancer prognosis

    Scott, R., Khan, F. M., Zeineh, J., Donovan, M. & Fernandez, G., 2015, Medical Imaging 2015: Digital Pathology. Gurcan, M. N. & Madabhushi, A. (eds.). SPIE, 94200E. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9420).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2014

    Gland ring morphometry for prostate cancer prognosis in multispectral immunofluorescence images

    Scott, R., Khan, F. M., Zeineh, J., Donovan, M. & Fernandez, G., 2014, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2014 - 17th International Conference, Proceedings. PART 1 ed. Springer Verlag, p. 585-592 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8673 LNCS, no. PART 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    9 Scopus citations
  • 2012

    Automated image analysis of in vivo microendoscopic images for quantitative diagnosis of esophageal squamous cell carcinoma

    Shin, D., Protano, M. A., Pierce, M., Polydorides, A., Zhang, F., Ananadasabapathy, S. & Richards-Kortum, R., 2012, Biomedical Optics, BIOMED 2012. p. BTu3A.68 (Biomedical Optics, BIOMED 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review