Friedman Brain Institute

2023

Online Unsupervised Representation Learning of Waveforms in the Intensive Care Unit via a novel cooperative framework: Spatially Resolved Temporal Networks (SpaRTEn)

Gulamali, F., Sawant, A., Hofer, I., Levin, M., Charney, A., Singh, K., Glicksberg, B. & Nadkarni, G., 2023, In: Proceedings of Machine Learning Research. 219, p. 230-247 18 p.

Research output: Contribution to journal › Conference article › peer-review

2021

Achieving Trustworthy Biomedical Data Solutions

Washington, P., Yeung, S., Percha, B., Tatonetti, N., Liphardt, J. & Wall, D. P., 2021, In: Pacific Symposium on Biocomputing. p. 1-13 13 p.

Research output: Contribution to journal › Conference article › peer-review

7 Scopus citations

2020

Appropriate Evaluation of Diagnostic Utility of Machine Learning Algorithm Generated Images

Kwon, Y. J., Toussie, D., Azour, L., Concepcion, J., Eber, C., Reina, G. A., Tang, P. T. P., Doshi, A. H., Oermann, E. K. & Costa, A. B., 2020, In: Proceedings of Machine Learning Research. 136, p. 179-193 15 p.

Research output: Contribution to journal › Conference article › peer-review

3 Scopus citations

Automated phenotyping of patients with non-Alcoholic fatty liver disease reveals clinically relevant disease subtypes

Vandromme, M., Jun, T., Perumalswami, P., Dudley, J. T., Branch, A. & Li, L., 2020, In: Pacific Symposium on Biocomputing. 25, 2020, p. 91-102 12 p.

Research output: Contribution to journal › Conference article › peer-review

14 Scopus citations

Scaling structural learning with NO-BEARS to infer causal transcriptome networks

Lee, H. C., Danieletto, M., Miotto, R., Cherng, S. T. & Dudley, J. T., 2020, In: Pacific Symposium on Biocomputing. 25, 2020, p. 391-402 12 p.

Research output: Contribution to journal › Conference article › peer-review

17 Scopus citations

2019

Enhancing high-content imaging for studying microtubule networks at large-scale

Lee, H. C., Cherng, S. T., Miotto, R. & Dudley, J. T., 2019, In: Proceedings of Machine Learning Research. 106, p. 592-613 22 p.

Research output: Contribution to journal › Conference article › peer-review

1 Scopus citations

Evaluation of patient re-identification using laboratory test orders and mitigation via latent space variables

Johnson, K. W., De Freitas, J. K., Glicksberg, B. S., Bobe, J. R. & Dudley, J. T., 2019, In: Pacific Symposium on Biocomputing. 24, 2019, p. 415-426 12 p.

Research output: Contribution to journal › Conference article › peer-review

3 Scopus citations

OPMI: The ontology of precision medicine and investigation and its support for clinical data and metadata representation and analysis

The Kidney Precision Medicine Project Consortium, 2019, In: CEUR Workshop Proceedings. 2931

Research output: Contribution to journal › Conference article › peer-review

1 Scopus citations

2018

Automated disease cohort selection using word embeddings from Electronic Health Records

Glicksberg, B. S., Miotto, R., Johnson, K. W., Shameer, K., Li, L., Chen, R. & Dudley, J. T., 2018, In: Pacific Symposium on Biocomputing. 0, 212669, p. 145-156 12 p.

Research output: Contribution to journal › Conference article › peer-review

52 Scopus citations

Causal inference on electronic health records to assess blood pressure treatment targets: An application of the parametric g formula

Johnson, K. W., Glicksberg, B. S., Hodos, R. A., Shameer, K. & Dudley, J. T., 2018, In: Pacific Symposium on Biocomputing. 0, p. 180-191 12 p.

Research output: Contribution to journal › Conference article › peer-review

14 Scopus citations

Cell-specific prediction and application of drug-induced gene expression profiles

Hodos, R., Zhang, P., Lee, H. C., Duan, Q., Wang, Z., Clark, N. R., Ma’ayan, A., Wang, F., Kidd, B., Hu, J., Sontag, D. & Dudley, J., 2018, In: Pacific Symposium on Biocomputing. 0, 212669, p. 32-43 12 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

24 Scopus citations

Characterization of drug-induced splicing complexity in prostate cancer cell line using long read technology

Chen, X., Houten, S., Allette, K., Sebra, R. P., Stolovitzky, G. & Losic, B., 2018, In: Pacific Symposium on Biocomputing. 0, p. 8-19 12 p.

Research output: Contribution to journal › Conference article › peer-review

4 Scopus citations

KTAO: A kidney tissue atlas ontology to support community-based kidney knowledge base development and data integration

He, Y., Steck, B., Ong, E., Mariani, L., Lienczewski, C., Balis, U., Kretzler, M., Himmelfarb, J., Bertram, J. F., Azeloglu, E., Iyengar, R., Hoshizaki, D. & Mooney, S. D., 2018, In: CEUR Workshop Proceedings. 2285

Research output: Contribution to journal › Conference article › peer-review

1 Scopus citations

Loss-of-function of neuroplasticity-related genes confers risk for human neurodevelopmental disorders

Smith, M. R., Glicksberg, B. S., Li, L., Chen, R., Morishita, H. & Dudley, J. T., 2018, In: Pacific Symposium on Biocomputing. 0, 212669, p. 68-79 12 p.

Research output: Contribution to journal › Conference article › peer-review

9 Scopus citations

2017

Classification Based on Feature Extraction for Hepatocellular Carcinoma Diagnosis Using High-throughput Dna Methylation Sequencing Data

Yang, Z., Jin, M., Zhang, Z., Lu, J. & Hao, K., 2017, In: Procedia Computer Science. 107, p. 412-417 6 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

15 Scopus citations

Exploring the reproducibility of probabilistic causal molecular network models

Cohain, A., Divaraniya, A. A., Zhu, K., Scarpa, J. R., Kasarskis, A., Zhu, J., Chang, R., Dudley, J. T. & Schadt, E. E., 2017, In: Pacific Symposium on Biocomputing. 0, p. 120-131 12 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

18 Scopus citations

Identify cancer driver genes through shared mendelian disease pathogenic variants and cancer somatic mutations

Ma, M., Wang, C., Glicksberg, B. S., Schadt, E. E., Li, S. D. & Chen, R., 2017, In: Pacific Symposium on Biocomputing. 0, 212679, p. 473-484 12 p.

Research output: Contribution to journal › Conference article › peer-review

6 Scopus citations

Learning parsimonious ensembles for unbalanced computational genomics problems

Stanescu, A. & Pandey, G., 2017, In: Pacific Symposium on Biocomputing. 0, p. 288-299 12 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

6 Scopus citations

Methods for clustering time series data acquired from mobile health apps

Tignor, N., Wang, P., Genes, N., Rogers, L., Hershman, S. G., Scott, E. R., Zweig, M., Chan, Y. F. Y. & Schadt, E. E., 2017, In: Pacific Symposium on Biocomputing. 0, p. 300-311 12 p.

Research output: Contribution to journal › Conference article › peer-review

9 Scopus citations

Predictive modeling of hospital readmission rates using electronic medical record-wide machine learning: A case-study using mount sinai heart failure cohort

Shameer, K., Johnson, K. W., Yahi, A., Miotto, R., Li, L. I., Ricks, D., Jebakaran, J., Kovatch, P., Sengupta, P. P., Gelijns, A., Moskovitz, A., Darrow, B., Reich, D. L., Kasarskis, A., Tatonetti, N. P., Pinney, S. & Dudley, J. T., 2017, In: Pacific Symposium on Biocomputing. 0, 212679, p. 276-287 12 p.

Research output: Contribution to journal › Conference article › peer-review

Open Access

113 Scopus citations

2015

An integrative pipeline for multi-modal discovery of disease relationships

Glicksberg, B. S., Li, L., Cheng, W. Y., Shameer, K., Hakenberg, J., Castellanos, R., Ma, M., Shi, L., Shah, H., Dudley, J. T. & Chen, R., 2015, In: Pacific Symposium on Biocomputing. p. 407-418 12 p.

Research output: Contribution to journal › Conference article › peer-review

20 Scopus citations

Causal inference in biology networks with integrated belief propagation

Chang, R., Karr, J. R. & Schadt, E. C., 2015, In: Pacific Symposium on Biocomputing. p. 359-370 12 p.

Research output: Contribution to journal › Conference article › peer-review

15 Scopus citations

Personalized medicine: From genotypes, molecular phenotypes and the quantified self, towards improved medicine

Dudley, J. T., Listgarten, J., Stegle, O., Brenner, S. E. & Parts, L., 2015, In: Pacific Symposium on Biocomputing. p. 342-346 5 p.

Research output: Contribution to journal › Conference article › peer-review

27 Scopus citations

2013

A comparative analysis of ensemble classifiers: Case studies in genomics

Whalen, S. & Pandey, G., 2013, In: Proceedings - IEEE International Conference on Data Mining, ICDM. p. 807-816 10 p., 6729565.

Research output: Contribution to journal › Conference article › peer-review

Open Access

52 Scopus citations

Multiscale dictionary learning for estimating conditional distributions

Petralia, F., Vogelstein, J. & Dunson, D. B., 2013, In: Advances in Neural Information Processing Systems.

Research output: Contribution to journal › Conference article › peer-review

2 Scopus citations

2005

Artificial gravity: A possible countermeasure for post-flight orthostatic intolerance

Moore, S. T., Diedrich, A., Biaggioni, I., Kaufmann, H., Raphan, T. & Cohen, B., May 2005, In: Acta Astronautica. 56, 9-12, p. 867-876 10 p.

Research output: Contribution to journal › Conference article › peer-review

29 Scopus citations

2004

Egg-sperm interactions at fertilization in mammals

Wassarman, P. M., Jovine, L., Litscher, E. S., Qi, H. & Williams, Z., 1 Jul 2004, In: European Journal of Obstetrics, Gynecology and Reproductive Biology. 115, SUPPL., p. S57-S60

Research output: Contribution to journal › Conference article › peer-review

31 Scopus citations

2000

Specificity of damage recognition and catalysis of DNA repair

Osman, R., Fuxreiter, M. & Luo, N., 2000, In: Computers and Chemistry. 24, 3-4, p. 331-339 9 p.

Research output: Contribution to journal › Conference article › peer-review

23 Scopus citations

1983

5. 8 GHz OPHTHALMIC MICROWAVE APPLICATOR FOR TREATMENT OF CHOROIDAL MELANOMA.

Finger, P. T., Packer, S., Svitra, P., Paglione, R. W., Albert, D. M. & Chess, J., 1983, In: IEEE MTT-S International Microwave Symposium Digest. p. 177-179 3 p.

Research output: Contribution to journal › Conference article › peer-review

7 Scopus citations

1980

HOT CELL FOR THE SYNTHESIS OF LABELED ORGANIC COMPOUNDS.

Fowler, J. S., Karlstrom, K., Koehler, C., Lambrecht, R. M., MacGregor, R. R., Ruth, T. J., Sceviour, W. & Wolf, A. P., 1980, In: Conference on Robotics and Remote Systems- Proceedings. p. 310-313 4 p.

Research output: Contribution to journal › Conference article › peer-review

3 Scopus citations

Friedman Brain Institute

Research output

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